Wall clock time and date at job start Mon Mar 30 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30930 * 1 3 3 Si 1.86792 * 120.00207 * 2 1 4 4 H 1.48507 * 109.47154 * 274.98183 * 3 2 1 5 5 H 1.48501 * 109.47315 * 34.97707 * 3 2 1 6 6 H 1.48503 * 109.47135 * 154.98196 * 3 2 1 7 7 C 1.39950 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00055 * 186.04792 * 7 2 1 9 9 C 1.39626 * 120.00198 * 6.04850 * 7 2 1 10 10 N 1.33458 * 126.52050 * 354.26842 * 9 7 2 11 11 N 1.28615 * 109.97833 * 179.97438 * 10 9 7 12 12 C 1.33336 * 109.99019 * 0.02562 * 11 10 9 13 13 C 1.39840 * 132.97551 * 180.02562 * 12 11 10 14 14 C 1.38493 * 119.11086 * 179.97438 * 13 12 11 15 15 O 1.35587 * 120.29823 * 179.97438 * 14 13 12 16 16 C 1.40706 * 119.39679 * 0.02562 * 14 13 12 17 17 C 1.35188 * 120.13697 * 359.97376 * 16 14 13 18 18 N 1.36035 * 120.74397 * 0.04848 * 17 16 14 19 19 H 0.97004 * 119.99921 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.44920 * 359.97138 * 13 12 11 21 21 H 0.96696 * 114.00169 * 90.00577 * 15 14 13 22 22 H 1.08005 * 119.92636 * 180.02562 * 16 14 13 23 23 H 1.08003 * 119.62986 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6176 0.0000 4 1 2.3856 2.1071 -1.3948 5 1 1.4974 2.6200 0.8026 6 1 3.5896 1.4119 0.5921 7 6 2.0090 -1.2120 -0.0005 8 1 3.0845 -1.2147 0.0980 9 6 1.3167 -2.4178 -0.1285 10 7 -0.0085 -2.5743 -0.1507 11 7 -0.3018 -3.8197 -0.2815 12 6 0.8142 -4.5459 -0.3514 13 6 1.0523 -5.9166 -0.4930 14 6 2.3593 -6.3727 -0.5343 15 8 2.6178 -7.6967 -0.6704 16 6 3.4165 -5.4497 -0.4326 17 6 3.1549 -4.1304 -0.2964 18 7 1.8732 -3.6762 -0.2548 19 1 -0.4850 0.8401 -0.0004 20 1 0.2281 -6.6103 -0.5691 21 1 2.6970 -7.9897 -1.5885 22 1 4.4390 -5.7959 -0.4642 23 1 3.9726 -3.4290 -0.2195 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261265267.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:43 Heat of formation + Delta-G solvation = 53.223026 kcal Electronic energy + Delta-G solvation = -12576.665168 eV Core-core repulsion = 10198.647074 eV Total energy + Delta-G solvation = -2378.018093 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.50565 -38.12736 -35.54511 -33.92728 -31.80208 -29.80631 -28.45089 -25.48364 -23.04739 -21.81194 -20.99061 -18.01475 -17.67222 -16.37665 -15.95615 -15.13156 -14.95297 -14.48609 -13.98126 -13.48854 -12.57858 -12.24466 -11.51865 -11.48901 -11.22347 -11.05609 -10.53345 -10.26453 -10.02981 -9.94896 -9.32051 -8.70981 -8.23863 -7.16153 -6.83366 -4.63389 1.51640 2.20716 2.94026 2.97722 3.02407 3.66344 3.91584 3.96349 4.39306 4.62806 5.13136 5.20727 5.58499 5.77047 5.94944 6.21301 6.57129 6.73107 6.77812 6.99824 7.05918 7.38894 7.79885 7.96986 8.06083 8.51313 8.62745 10.09152 10.37444 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.063901 B = 0.009549 C = 0.008345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.074985 B = 2931.646823 C = 3354.467084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.073 3.927 3 Si 0.927 3.073 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.434 4.434 8 H 0.089 0.911 9 C 0.317 3.683 10 N -0.301 5.301 11 N -0.282 5.282 12 C 0.090 3.910 13 C -0.081 4.081 14 C 0.075 3.925 15 O -0.494 6.494 16 C -0.214 4.214 17 C 0.123 3.877 18 N -0.444 5.444 19 H 0.284 0.716 20 H 0.136 0.864 21 H 0.378 0.622 22 H 0.137 0.863 23 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.441 -4.197 -2.200 8.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.153 4.153 3 Si 0.750 3.250 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.474 4.474 8 H 0.107 0.893 9 C 0.080 3.920 10 N -0.147 5.147 11 N -0.129 5.129 12 C -0.157 4.157 13 C -0.103 4.103 14 C 0.023 3.977 15 O -0.302 6.302 16 C -0.239 4.239 17 C -0.002 4.002 18 N -0.133 5.133 19 H 0.095 0.905 20 H 0.154 0.846 21 H 0.233 0.767 22 H 0.154 0.846 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.522 -3.568 -1.523 6.749 hybrid contribution 1.854 0.324 -0.534 1.957 sum 7.377 -3.243 -2.058 8.317 Atomic orbital electron populations 1.70047 1.07139 1.29245 1.28971 1.25846 0.95061 1.00990 0.93406 0.85993 0.80025 0.79712 0.79242 1.19230 1.19743 1.18451 1.18168 0.94727 0.87298 1.47163 0.89294 1.21713 0.89343 0.82994 0.97984 1.75694 1.08126 1.05164 1.25745 1.74798 1.21615 0.99835 1.16606 1.21205 0.85693 0.91952 1.16811 1.20335 0.96317 0.91199 1.02474 1.18122 0.91069 0.82815 1.05672 1.84748 1.93502 1.20810 1.31168 1.20567 0.99512 0.91383 1.12397 1.21169 0.86304 0.95347 0.97378 1.43851 1.05723 1.09239 1.54466 0.90541 0.84575 0.76703 0.84564 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.52 11.95 55.55 0.66 -18.85 14 2 C 0.07 1.81 5.49 -17.30 -0.09 1.71 14 3 Si 0.93 17.81 29.56 -169.99 -5.03 12.79 14 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 14 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 14 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 14 7 C -0.43 -11.20 9.26 -38.42 -0.36 -11.55 14 8 H 0.09 2.05 7.85 -52.49 -0.41 1.63 14 9 C 0.32 8.80 7.58 -154.72 -1.17 7.63 14 10 N -0.30 -9.04 10.49 31.26 0.33 -8.72 14 11 N -0.28 -8.00 12.32 31.12 0.38 -7.62 14 12 C 0.09 2.26 7.88 -155.51 -1.23 1.03 14 13 C -0.08 -1.65 10.10 -38.89 -0.39 -2.05 14 14 C 0.07 1.33 6.77 -38.56 -0.26 1.06 14 15 O -0.49 -7.25 13.51 -18.46 -0.25 -7.50 14 16 C -0.21 -3.63 9.95 -39.74 -0.40 -4.03 14 17 C 0.12 2.39 10.86 -16.77 -0.18 2.21 14 18 N -0.44 -10.89 2.99 -62.09 -0.19 -11.08 14 19 H 0.28 6.76 8.30 -40.82 -0.34 6.42 14 20 H 0.14 2.48 8.06 -52.49 -0.42 2.06 14 21 H 0.38 3.57 9.06 45.56 0.41 3.99 14 22 H 0.14 1.84 8.06 -52.48 -0.42 1.41 14 23 H 0.15 2.47 8.06 -52.48 -0.42 2.05 14 LS Contribution 219.42 15.07 3.31 3.31 Total: -1.00 -32.64 219.42 -5.26 -37.90 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -0.40 Total: 3.75 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -4.08 Total: -3.98 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 1.19 Total: -46.27 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.25 Total: -7.50 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -32.64 -5.26 -37.90 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265267.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.128 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds