Wall clock time and date at job start Mon Mar 30 2020 02:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30449 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48496 * 109.46955 * 269.99995 * 3 2 1 5 5 H 1.48502 * 109.46929 * 29.99562 * 3 2 1 6 6 H 1.48494 * 109.47412 * 149.99620 * 3 2 1 7 7 C 1.40706 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99783 * 180.02562 * 7 2 1 9 9 C 1.38392 * 120.00279 * 0.02562 * 7 2 1 10 10 O 1.35163 * 126.78743 * 359.97382 * 9 7 2 11 11 N 1.41280 * 109.94277 * 180.02562 * 10 9 7 12 12 C 1.31437 * 110.54530 * 0.02562 * 11 10 9 13 13 C 1.45959 * 126.79431 * 180.02562 * 9 7 2 14 14 C 1.39161 * 135.08013 * 0.02562 * 13 9 7 15 15 C 1.37756 * 120.35093 * 179.70877 * 14 13 9 16 16 C 1.38805 * 122.17078 * 0.54862 * 15 14 13 17 17 C 1.37900 * 121.40536 * 359.43294 * 16 15 14 18 18 O 1.35652 * 120.61525 * 180.30231 * 17 16 15 19 19 H 0.97001 * 120.00483 * 0.02562 * 1 2 3 20 20 H 1.07997 * 119.82355 * 359.97438 * 14 13 9 21 21 H 1.07996 * 118.91930 * 180.27922 * 15 14 13 22 22 H 1.08002 * 119.29967 * 179.71815 * 16 15 14 23 23 H 0.96704 * 114.00241 * 90.00208 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3045 0.0000 0.0000 3 14 2.2385 1.6177 0.0000 4 1 2.4860 2.0463 -1.4001 5 1 1.4359 2.6527 0.7000 6 1 3.5360 1.4402 0.7001 7 6 2.0080 -1.2186 0.0005 8 1 3.0881 -1.2185 0.0010 9 6 1.3161 -2.4171 0.0005 10 8 -0.0261 -2.5769 0.0006 11 7 -0.3476 -3.9526 0.0011 12 6 0.7460 -4.6819 0.0021 13 6 1.8913 -3.7586 0.0016 14 6 3.1827 -4.2770 0.0033 15 6 3.3858 -5.6395 0.0099 16 6 2.3327 -6.5438 0.0039 17 6 1.0208 -6.1189 0.0026 18 8 0.0039 -7.0167 0.0028 19 1 -0.4851 0.8400 -0.0004 20 1 4.0302 -3.6076 0.0037 21 1 4.3978 -6.0166 0.0157 22 1 2.5453 -7.6026 0.0049 23 1 -0.2916 -7.2761 0.8863 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267396.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:51 Heat of formation + Delta-G solvation = -30.172381 kcal Electronic energy + Delta-G solvation = -12504.149284 eV Core-core repulsion = 10090.222143 eV Total energy + Delta-G solvation = -2413.927141 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.26674 -38.95640 -36.71548 -36.27824 -32.77845 -31.93996 -29.79355 -27.46955 -24.63766 -22.66024 -21.97406 -19.80887 -18.83944 -17.47293 -17.28293 -16.61044 -16.12062 -15.86436 -15.21821 -14.94873 -14.22301 -13.69104 -13.50789 -13.23266 -12.71389 -12.61908 -12.49996 -11.99836 -11.65368 -11.40969 -11.13340 -10.98928 -9.95318 -9.29589 -8.75926 -7.05342 -0.01036 1.03895 1.26644 1.31375 1.57982 1.70625 2.01476 2.60451 2.64228 3.08554 3.51041 3.80639 4.19791 4.33426 4.51830 4.65884 4.76601 4.98261 5.36433 5.49760 5.68841 5.79115 5.88305 5.91429 6.09077 6.31329 6.97340 7.34627 7.67094 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.056622 B = 0.009872 C = 0.008437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.385280 B = 2835.735669 C = 3317.728595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.006 3.994 3 Si 1.030 2.970 4 H -0.249 1.249 5 H -0.259 1.259 6 H -0.232 1.232 7 C -0.344 4.344 8 H 0.153 0.847 9 C 0.182 3.818 10 O -0.124 6.124 11 N -0.495 5.495 12 C 0.104 3.896 13 C -0.345 4.345 14 C 0.005 3.995 15 C -0.256 4.256 16 C -0.049 4.049 17 C -0.024 4.024 18 O -0.497 6.497 19 H 0.319 0.681 20 H 0.137 0.863 21 H 0.149 0.851 22 H 0.151 0.849 23 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.867 2.054 1.668 9.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.221 4.221 3 Si 0.843 3.157 4 H -0.173 1.173 5 H -0.183 1.183 6 H -0.154 1.154 7 C -0.369 4.369 8 H 0.171 0.829 9 C 0.122 3.878 10 O -0.121 6.121 11 N -0.264 5.264 12 C -0.051 4.051 13 C -0.354 4.354 14 C -0.014 4.014 15 C -0.277 4.277 16 C -0.069 4.069 17 C -0.074 4.074 18 O -0.306 6.306 19 H 0.131 0.869 20 H 0.155 0.845 21 H 0.167 0.833 22 H 0.168 0.832 23 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.298 2.273 1.057 7.717 hybrid contribution 0.070 0.322 0.491 0.591 sum 7.368 2.595 1.548 7.964 Atomic orbital electron populations 1.69701 1.10720 1.34602 1.21400 1.28076 0.96014 1.07197 0.90857 0.84491 0.79074 0.71217 0.80885 1.17263 1.18271 1.15425 1.20179 0.97870 0.87400 1.31495 0.82935 1.21904 0.83944 0.93981 0.87971 1.89190 1.20245 1.22077 1.80604 1.79979 1.17626 0.84216 1.44595 1.23495 0.92580 0.96012 0.92969 1.21531 0.95528 0.89598 1.28699 1.20521 0.93240 0.96022 0.91619 1.20477 0.99083 0.91512 1.16584 1.21147 0.89664 1.00819 0.95255 1.18508 0.88110 0.81759 1.18972 1.84742 1.52469 1.59735 1.33658 0.86890 0.84515 0.83337 0.83150 0.76396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -35.13 12.02 21.96 0.26 -34.87 14 2 C 0.01 0.25 5.51 85.50 0.47 0.72 14 3 Si 1.03 28.40 29.57 68.60 2.03 30.42 14 4 H -0.25 -6.57 7.11 99.48 0.71 -5.86 14 5 H -0.26 -6.85 7.11 99.48 0.71 -6.14 14 6 H -0.23 -5.75 7.11 99.48 0.71 -5.04 14 7 C -0.34 -15.79 9.33 22.91 0.21 -15.58 14 8 H 0.15 5.79 7.86 -2.91 -0.02 5.77 14 9 C 0.18 10.05 7.06 24.31 0.17 10.22 14 10 O -0.12 -7.78 10.36 26.49 0.27 -7.51 14 11 N -0.49 -31.05 12.84 -45.55 -0.58 -31.64 14 12 C 0.10 5.90 7.65 43.63 0.33 6.23 14 13 C -0.34 -18.13 6.50 -18.73 -0.12 -18.25 14 14 C 0.00 0.19 10.04 22.38 0.22 0.42 14 15 C -0.26 -9.40 9.93 22.29 0.22 -9.18 14 16 C -0.05 -1.90 9.91 22.33 0.22 -1.68 14 17 C -0.02 -1.15 6.97 24.29 0.17 -0.98 14 18 O -0.50 -21.70 13.55 -89.67 -1.21 -22.91 14 19 H 0.32 12.83 8.29 -92.71 -0.77 12.07 14 20 H 0.14 4.70 8.06 -2.91 -0.02 4.67 14 21 H 0.15 4.14 8.06 -2.91 -0.02 4.12 14 22 H 0.15 4.58 8.06 -2.91 -0.02 4.55 14 23 H 0.38 12.84 9.06 -74.05 -0.67 12.17 14 Total: -1.00 -71.55 221.92 3.26 -68.29 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.59 Total: 26.30 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 1.90 Total: -28.09 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -0.32 Total: -66.50 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.94 Total: -30.42 kcal Atomic # 14 Polarization: 28.40 SS G_CDS: 2.03 Total: 30.42 kcal Total: -71.55 3.26 -68.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267396.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.116 kcal (2) G-P(sol) polarization free energy of solvation -71.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds