Wall clock time and date at job start Mon Mar 30 2020 02:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30425 * 1 3 3 Si 1.86805 * 119.99758 * 2 1 4 4 H 1.48498 * 109.47244 * 270.00442 * 3 2 1 5 5 H 1.48493 * 109.47155 * 30.00330 * 3 2 1 6 6 H 1.48506 * 109.46984 * 150.00449 * 3 2 1 7 7 C 1.40748 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99870 * 179.97438 * 7 2 1 9 9 C 1.38358 * 119.99775 * 359.97438 * 7 2 1 10 10 O 1.35148 * 126.79986 * 359.97438 * 9 7 2 11 11 N 1.41232 * 109.96674 * 179.79963 * 10 9 7 12 12 C 1.31692 * 110.58400 * 0.36327 * 11 10 9 13 13 C 1.41505 * 134.13522 * 179.97438 * 12 11 10 14 14 C 1.35829 * 119.73688 * 179.68359 * 13 12 11 15 15 C 1.39766 * 121.64853 * 0.02562 * 14 13 12 16 16 O 1.35740 * 119.37351 * 180.02562 * 15 14 13 17 17 C 1.38465 * 121.25888 * 359.97253 * 15 14 13 18 18 C 1.39139 * 119.48248 * 0.04850 * 17 15 14 19 19 H 0.97003 * 120.00010 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.13074 * 359.70635 * 13 12 11 21 21 H 1.08003 * 119.17179 * 180.02562 * 14 13 12 22 22 H 0.96697 * 114.00535 * 89.99778 * 16 15 14 23 23 H 1.07997 * 120.26071 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3042 0.0000 0.0000 3 14 2.2382 1.6178 0.0000 4 1 2.4856 2.0466 -1.4000 5 1 1.4357 2.6527 0.7001 6 1 3.5359 1.4402 0.7000 7 6 2.0081 -1.2189 -0.0005 8 1 3.0880 -1.2188 -0.0010 9 6 1.3163 -2.4171 -0.0005 10 8 -0.0257 -2.5771 0.0004 11 7 -0.3474 -3.9523 -0.0046 12 6 0.7476 -4.6840 -0.0009 13 6 1.0027 -6.0759 -0.0027 14 6 2.2842 -6.5260 -0.0040 15 6 3.3704 -5.6464 -0.0033 16 8 4.6322 -6.1467 -0.0053 17 6 3.1839 -4.2744 -0.0017 18 6 1.8915 -3.7590 0.0003 19 1 -0.4850 0.8401 0.0004 20 1 0.1816 -6.7775 -0.0032 21 1 2.4684 -7.5902 -0.0058 22 1 4.9972 -6.2900 -0.8892 23 1 4.0349 -3.6095 -0.0015 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261305807.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:13 Heat of formation + Delta-G solvation = -29.995050 kcal Electronic energy + Delta-G solvation = -12469.504686 eV Core-core repulsion = 10055.585235 eV Total energy + Delta-G solvation = -2413.919451 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.34029 -39.22916 -36.68202 -36.06896 -32.77018 -31.96492 -30.34877 -27.17352 -24.79916 -22.64087 -21.99240 -19.57238 -19.16553 -17.52849 -17.41644 -16.48267 -16.06373 -15.78056 -15.09966 -14.76170 -14.20787 -13.95726 -13.54515 -13.26740 -12.96102 -12.73919 -12.68578 -12.02849 -11.62835 -11.41086 -10.93652 -10.88027 -10.00111 -9.30515 -8.88189 -7.05611 -0.00458 0.95908 1.21603 1.30717 1.57127 1.72315 2.01083 2.61852 2.70743 3.06654 3.57941 3.90614 4.04411 4.34908 4.50455 4.53232 4.82368 4.87383 5.39169 5.42639 5.63369 5.75994 5.82981 5.92511 6.00799 6.21345 7.19220 7.30963 7.66008 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.044804 B = 0.010335 C = 0.008429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.800992 B = 2708.510542 C = 3320.935376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.007 3.993 3 Si 1.028 2.972 4 H -0.247 1.247 5 H -0.257 1.257 6 H -0.236 1.236 7 C -0.344 4.344 8 H 0.149 0.851 9 C 0.184 3.816 10 O -0.121 6.121 11 N -0.502 5.502 12 C 0.123 3.877 13 C -0.204 4.204 14 C -0.046 4.046 15 C -0.057 4.057 16 O -0.499 6.499 17 C -0.016 4.016 18 C -0.337 4.337 19 H 0.319 0.681 20 H 0.127 0.873 21 H 0.150 0.850 22 H 0.386 0.614 23 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.267 2.075 -1.653 8.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.221 4.221 3 Si 0.842 3.158 4 H -0.171 1.171 5 H -0.181 1.181 6 H -0.158 1.158 7 C -0.369 4.369 8 H 0.166 0.834 9 C 0.124 3.876 10 O -0.118 6.118 11 N -0.273 5.273 12 C -0.029 4.029 13 C -0.227 4.227 14 C -0.066 4.066 15 C -0.104 4.104 16 O -0.308 6.308 17 C -0.035 4.035 18 C -0.346 4.346 19 H 0.132 0.868 20 H 0.145 0.855 21 H 0.168 0.832 22 H 0.241 0.759 23 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.588 2.276 -1.036 7.047 hybrid contribution 0.435 0.329 -0.500 0.740 sum 7.024 2.605 -1.536 7.647 Atomic orbital electron populations 1.69677 1.10608 1.34658 1.21093 1.28033 0.96038 1.07033 0.90952 0.84509 0.78992 0.71341 0.80958 1.17078 1.18088 1.15821 1.20160 0.97750 0.87614 1.31398 0.83358 1.21818 0.84072 0.93721 0.88036 1.89164 1.19869 1.22276 1.80485 1.80027 1.17307 0.84054 1.45944 1.21986 0.91970 0.96335 0.92583 1.19704 0.97572 0.89449 1.15962 1.20877 0.90830 1.00306 0.94600 1.17709 0.84461 0.89763 1.18467 1.84806 1.26586 1.85326 1.34084 1.20659 0.94006 0.95028 0.93803 1.21437 0.95131 0.90386 1.27619 0.86785 0.85549 0.83220 0.75935 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -34.59 12.02 21.97 0.26 -34.32 14 2 C 0.01 0.30 5.51 85.52 0.47 0.77 14 3 Si 1.03 28.57 29.57 68.60 2.03 30.60 14 4 H -0.25 -6.51 7.11 99.48 0.71 -5.80 14 5 H -0.26 -6.80 7.11 99.48 0.71 -6.10 14 6 H -0.24 -6.03 7.11 99.48 0.71 -5.33 14 7 C -0.34 -15.91 9.34 22.91 0.21 -15.69 14 8 H 0.15 5.80 7.86 -2.91 -0.02 5.78 14 9 C 0.18 10.11 7.06 24.31 0.17 10.28 14 10 O -0.12 -7.47 10.36 26.76 0.28 -7.20 14 11 N -0.50 -30.61 12.84 -48.67 -0.63 -31.23 14 12 C 0.12 6.80 7.47 42.30 0.32 7.11 14 13 C -0.20 -9.29 10.10 22.52 0.23 -9.06 14 14 C -0.05 -1.79 9.82 22.08 0.22 -1.57 14 15 C -0.06 -2.28 6.70 22.69 0.15 -2.12 14 16 O -0.50 -16.37 13.46 -90.65 -1.22 -17.59 14 17 C -0.02 -0.70 10.02 22.54 0.23 -0.47 14 18 C -0.34 -17.78 6.49 -18.72 -0.12 -17.90 14 19 H 0.32 12.69 8.29 -92.71 -0.77 11.92 14 20 H 0.13 5.20 8.06 -2.91 -0.02 5.17 14 21 H 0.15 4.60 8.06 -2.91 -0.02 4.58 14 22 H 0.39 8.61 9.06 -74.06 -0.67 7.94 14 23 H 0.13 5.05 8.06 -2.91 -0.02 5.02 14 Total: -1.00 -68.40 221.44 3.19 -65.21 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.59 Total: 23.20 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 1.87 Total: -28.66 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.36 Total: -65.56 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.94 Total: -24.78 kcal Atomic # 14 Polarization: 28.57 SS G_CDS: 2.03 Total: 30.60 kcal Total: -68.40 3.19 -65.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261305807.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.215 kcal (2) G-P(sol) polarization free energy of solvation -68.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds