Wall clock time and date at job start Mon Mar 30 2020 02:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86801 * 120.00174 * 2 1 4 4 H 1.48505 * 109.46869 * 239.99870 * 3 2 1 5 5 H 1.48507 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47378 * 119.99470 * 3 2 1 7 7 C 1.40145 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00038 * 197.94849 * 7 2 1 9 9 C 1.41256 * 119.99757 * 17.95506 * 7 2 1 10 10 C 1.41169 * 119.86718 * 24.88290 * 9 7 2 11 11 C 1.36196 * 120.23301 * 180.02562 * 10 9 7 12 12 C 1.39381 * 119.91906 * 0.02562 * 11 10 9 13 13 C 1.41415 * 120.77833 * 359.97438 * 12 11 10 14 14 C 1.38433 * 119.33959 * 0.02562 * 13 12 11 15 15 N 1.37129 * 105.82357 * 180.02562 * 13 12 11 16 16 H 0.96996 * 123.63452 * 180.02562 * 15 13 12 17 17 O 1.20938 * 112.72446 * 0.02562 * 15 13 12 18 18 C 1.34390 * 112.79936 * 359.97438 * 17 15 13 19 19 O 1.21760 * 127.31325 * 179.97438 * 18 17 15 20 20 H 0.96999 * 119.99641 * 0.02562 * 1 2 3 21 21 H 1.07997 * 119.88047 * 0.27610 * 10 9 7 22 22 H 1.08006 * 120.03681 * 180.02562 * 11 10 9 23 23 H 1.07995 * 120.26942 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0947 1.6963 -1.2125 5 1 1.2759 2.7465 -0.0006 6 1 3.0946 1.6965 1.2126 7 6 2.0076 -1.2137 0.0005 8 1 3.0482 -1.2364 0.2888 9 6 1.3528 -2.4074 -0.3760 10 6 0.2262 -2.3535 -1.2249 11 6 -0.4111 -3.4997 -1.5923 12 6 0.0497 -4.7306 -1.1285 13 6 1.1764 -4.8075 -0.2774 14 6 1.8248 -3.6429 0.0965 15 7 1.3564 -6.1413 -0.0147 16 1 2.0654 -6.4868 0.5498 17 8 0.5357 -6.8403 -0.5629 18 6 -0.3464 -6.1346 -1.2910 19 8 -1.2763 -6.5679 -1.9468 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1292 -1.4003 -1.5875 22 1 -1.2726 -3.4548 -2.2422 23 1 2.6869 -3.6842 0.7456 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261306119.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:15 Heat of formation + Delta-G solvation = 19.785321 kcal Electronic energy + Delta-G solvation = -12550.522522 eV Core-core repulsion = 10138.761710 eV Total energy + Delta-G solvation = -2411.760812 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.34937 -37.38464 -37.01746 -34.07957 -31.61485 -30.35230 -28.75901 -26.20831 -22.89432 -21.78791 -20.41862 -18.21030 -17.88125 -16.88048 -16.23542 -15.58958 -14.79508 -14.33019 -13.19124 -13.12723 -12.65007 -12.53293 -12.15472 -11.64431 -11.38269 -11.24376 -10.88460 -10.44131 -9.94497 -9.52224 -9.14738 -8.92309 -7.87134 -7.18524 -6.67697 -4.79817 2.04288 2.82815 2.88838 2.89627 2.92445 3.10550 3.50504 3.65775 4.34276 4.42654 5.37161 5.62665 5.87816 6.52333 6.62496 6.68433 6.83183 6.96827 7.34907 7.51927 7.68629 7.87729 7.88433 8.25097 8.42048 8.48957 8.57393 9.05635 9.75825 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.072184 B = 0.008822 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.805242 B = 3173.076921 C = 3487.578514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.433 4.433 8 H 0.089 0.911 9 C 0.160 3.840 10 C -0.183 4.183 11 C -0.004 4.004 12 C -0.375 4.375 13 C 0.183 3.817 14 C -0.277 4.277 15 N -0.560 5.560 16 H 0.448 0.552 17 O -0.086 6.086 18 C 0.488 3.512 19 O -0.505 6.505 20 H 0.291 0.709 21 H 0.127 0.873 22 H 0.101 0.899 23 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 0.178 1.426 4.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.460 4.460 8 H 0.107 0.893 9 C 0.156 3.844 10 C -0.202 4.202 11 C -0.024 4.024 12 C -0.381 4.381 13 C 0.080 3.920 14 C -0.303 4.303 15 N -0.233 5.233 16 H 0.296 0.704 17 O -0.105 6.105 18 C 0.341 3.659 19 O -0.397 6.397 20 H 0.102 0.898 21 H 0.144 0.856 22 H 0.119 0.881 23 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.500 -0.231 1.144 3.689 hybrid contribution 0.572 0.547 0.350 0.865 sum 4.072 0.316 1.494 4.349 Atomic orbital electron populations 1.69761 1.07981 1.30624 1.30113 1.26150 0.94869 1.02120 0.91791 0.86188 0.80178 0.79092 0.80449 1.18314 1.19912 1.18549 1.19845 0.98522 0.90882 1.36784 0.89334 1.17452 0.89541 0.91203 0.86220 1.21036 0.99839 0.96931 1.02426 1.19590 0.96933 0.89781 0.96086 1.19560 1.06703 0.93484 1.18336 1.18766 0.95094 0.84078 0.94074 1.19661 1.07815 0.88866 1.13928 1.40377 1.28793 1.01365 1.52792 0.70367 1.84110 1.36641 1.31244 1.58470 1.20745 0.80533 0.86428 0.78220 1.90872 1.27842 1.79110 1.41860 0.89801 0.85565 0.88081 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.55 10.96 55.56 0.61 -16.94 14 2 C 0.07 1.63 5.12 -17.32 -0.09 1.54 14 3 Si 0.92 16.32 29.60 -169.99 -5.03 11.29 14 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 14 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 14 6 H -0.26 -4.59 7.11 56.52 0.40 -4.19 14 7 C -0.43 -10.13 9.03 -37.72 -0.34 -10.47 14 8 H 0.09 1.94 7.91 -52.49 -0.42 1.52 14 9 C 0.16 3.90 5.57 -106.80 -0.60 3.31 14 10 C -0.18 -4.45 8.61 -39.20 -0.34 -4.79 14 11 C 0.00 -0.11 10.01 -39.89 -0.40 -0.51 14 12 C -0.37 -9.01 6.55 -104.81 -0.69 -9.69 14 13 C 0.18 4.04 7.37 -84.22 -0.62 3.42 14 14 C -0.28 -6.25 9.81 -38.68 -0.38 -6.63 14 15 N -0.56 -10.37 6.76 32.33 0.22 -10.16 14 16 H 0.45 6.16 8.96 -40.82 -0.37 5.80 14 17 O -0.09 -1.78 11.13 -7.88 -0.09 -1.86 14 18 C 0.49 11.57 8.94 34.18 0.31 11.88 14 19 O -0.50 -12.91 18.06 -18.98 -0.34 -13.26 14 20 H 0.29 6.01 8.29 -40.82 -0.34 5.67 14 21 H 0.13 3.08 6.16 -52.49 -0.32 2.75 14 22 H 0.10 2.24 8.06 -52.48 -0.42 1.82 14 23 H 0.10 2.08 8.06 -52.49 -0.42 1.66 14 LS Contribution 216.29 15.07 3.26 3.26 Total: -1.00 -27.55 216.29 -5.60 -33.15 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -1.08 Total: 6.46 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -3.14 Total: -11.95 kcal Atomic # 7 Polarization: -27.92 SS G_CDS: 0.83 Total: -27.10 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.43 Total: -15.12 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.03 Total: 11.29 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -27.55 -5.60 -33.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261306119.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.940 kcal (2) G-P(sol) polarization free energy of solvation -27.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds