Wall clock time and date at job start Mon Mar 30 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46901 * 108.89731 * 298.40221 * 9 7 2 11 11 C 1.52967 * 108.93102 * 179.72225 * 9 7 2 12 12 C 1.55100 * 108.66790 * 209.33501 * 11 9 7 13 13 S 1.83850 * 101.18818 * 41.86954 * 12 11 9 14 14 O 1.42099 * 109.61099 * 77.09728 * 13 12 11 15 15 O 1.42097 * 109.61499 * 210.87231 * 13 12 11 16 16 C 1.53617 * 108.93076 * 56.95685 * 9 7 2 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 1.00904 * 110.99787 * 59.30197 * 10 9 7 19 19 H 1.00895 * 111.00016 * 183.25219 * 10 9 7 20 20 H 1.09006 * 109.65237 * 329.17286 * 11 9 7 21 21 H 1.08997 * 109.65635 * 89.49302 * 11 9 7 22 22 H 1.08995 * 111.08534 * 159.84789 * 12 11 9 23 23 H 1.09002 * 111.07230 * 283.89843 * 12 11 9 24 24 H 1.09006 * 110.26948 * 242.06859 * 16 9 7 25 25 H 1.08997 * 110.27786 * 4.13417 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 0.4353 -2.5831 1.2135 11 6 2.2558 -3.6525 -0.0104 12 6 1.6162 -4.8651 -0.7357 13 16 0.7954 -4.0378 -2.1577 14 8 1.7659 -3.7050 -3.1409 15 8 -0.3697 -4.7639 -2.5244 16 6 0.3208 -2.5321 -1.2275 17 1 -0.4850 0.8401 -0.0004 18 1 -0.2181 -1.8159 1.2649 19 1 -0.0432 -3.4697 1.2681 20 1 3.1613 -3.3475 -0.5350 21 1 2.5034 -3.9275 1.0148 22 1 2.3790 -5.5651 -1.0765 23 1 0.8864 -5.3632 -0.0975 24 1 -0.7195 -2.5975 -0.9086 25 1 0.4731 -1.6449 -1.8421 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261320459.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:25 Heat of formation + Delta-G solvation = -95.419321 kcal Electronic energy + Delta-G solvation = -12252.024813 eV Core-core repulsion = 9970.712303 eV Total energy + Delta-G solvation = -2281.312509 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.68587 -37.88973 -36.91087 -34.19161 -31.74691 -29.29027 -27.75405 -24.96999 -21.02624 -19.73166 -18.44534 -17.47207 -17.30566 -16.57015 -16.41489 -15.66009 -15.06291 -14.61803 -14.35513 -13.64192 -13.48706 -13.14236 -13.05372 -12.98270 -12.76106 -12.46126 -12.09549 -11.85294 -11.59309 -11.07315 -11.00819 -10.54813 -9.00250 -8.15435 -6.26172 -0.65947 1.44603 1.46522 1.51970 1.77102 2.42864 2.82026 3.12317 3.21467 3.83972 4.07518 4.30208 4.37029 4.38805 4.75667 4.80471 5.14231 5.22693 5.63034 5.80784 6.12077 6.65827 6.98279 7.31944 7.46169 8.90125 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.048937 B = 0.012912 C = 0.012411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.031800 B = 2168.077554 C = 2255.434302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.062 0.938 9 C 0.238 3.762 10 N -0.838 5.838 11 C -0.105 4.105 12 C -0.549 4.549 13 S 2.360 3.640 14 O -0.984 6.984 15 O -0.991 6.991 16 C -0.552 4.552 17 H 0.264 0.736 18 H 0.351 0.649 19 H 0.315 0.685 20 H 0.079 0.921 21 H 0.105 0.895 22 H 0.158 0.842 23 H 0.156 0.844 24 H 0.115 0.885 25 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 -6.576 0.828 6.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.080 0.920 9 C 0.144 3.856 10 N -0.370 5.370 11 C -0.145 4.145 12 C -0.682 4.682 13 S 2.550 3.450 14 O -0.981 6.981 15 O -0.988 6.988 16 C -0.687 4.687 17 H 0.073 0.927 18 H 0.167 0.833 19 H 0.126 0.874 20 H 0.098 0.902 21 H 0.124 0.876 22 H 0.176 0.824 23 H 0.174 0.826 24 H 0.133 0.867 25 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.918 -6.656 0.207 6.930 hybrid contribution -0.561 1.434 -0.039 1.540 sum 1.358 -5.222 0.168 5.398 Atomic orbital electron populations 1.69782 1.06566 1.27506 1.50692 1.25564 0.95733 1.01840 0.94060 0.85780 0.78559 0.79703 0.78579 1.20211 1.21296 1.19844 1.21452 0.93222 0.90720 1.50814 0.92030 1.18548 0.89107 0.94177 0.83780 1.59349 1.31148 1.06690 1.39794 1.22144 0.98660 0.90089 1.03582 1.30370 1.13593 1.07900 1.16343 1.09708 0.75608 0.80148 0.79487 1.93499 1.61839 1.84191 1.58613 1.93475 1.49562 1.71717 1.84089 1.30921 1.08701 1.16062 1.13046 0.92694 0.83271 0.87352 0.90220 0.87636 0.82430 0.82585 0.86683 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.28 10.27 21.45 0.22 -46.06 15 2 C 0.03 1.45 4.88 84.66 0.41 1.87 15 3 Si 0.95 41.29 29.54 68.60 2.03 43.32 15 4 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 15 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 7 C -0.52 -25.80 7.91 25.60 0.20 -25.59 15 8 H 0.06 3.01 7.54 -2.91 -0.02 2.99 15 9 C 0.24 9.92 0.80 2.98 0.00 9.92 15 10 N -0.84 -33.92 8.56 -153.74 -1.32 -35.24 15 11 C -0.11 -3.50 5.40 31.30 0.17 -3.33 15 12 C -0.55 -14.33 7.46 72.70 0.54 -13.78 15 13 S 2.36 83.35 6.05 -56.49 -0.34 83.01 15 14 O -0.98 -41.61 18.16 -127.50 -2.32 -43.92 15 15 O -0.99 -39.16 18.16 -127.50 -2.32 -41.48 15 16 C -0.55 -22.68 5.48 72.19 0.40 -22.28 15 17 H 0.26 13.14 8.31 -92.70 -0.77 12.37 15 18 H 0.35 15.86 6.95 -89.69 -0.62 15.24 15 19 H 0.32 10.49 9.00 -89.70 -0.81 9.69 15 20 H 0.08 2.69 7.67 -2.38 -0.02 2.67 15 21 H 0.11 3.26 8.02 -2.39 -0.02 3.25 15 22 H 0.16 3.14 8.14 -2.39 -0.02 3.13 15 23 H 0.16 3.25 8.14 -2.39 -0.02 3.23 15 24 H 0.11 4.62 7.87 -2.38 -0.02 4.60 15 25 H 0.11 5.14 6.96 -2.39 -0.02 5.13 15 Total: -1.00 -62.85 222.59 -2.53 -65.38 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.21 Total: 28.20 kcal Atomic # 6 Polarization: -54.93 SS G_CDS: 1.73 Total: -53.21 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -1.10 Total: -81.29 kcal Atomic # 8 Polarization: -80.77 SS G_CDS: -4.63 Total: -85.40 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 83.35 SS G_CDS: -0.34 Total: 83.01 kcal Total: -62.85 -2.53 -65.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261320459.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.043 kcal (2) G-P(sol) polarization free energy of solvation -62.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds