Wall clock time and date at job start Mon Mar 30 2020 02:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30712 * 1 3 3 Si 1.86797 * 119.99687 * 2 1 4 4 H 1.48492 * 109.47419 * 274.98516 * 3 2 1 5 5 H 1.48496 * 109.47171 * 34.99021 * 3 2 1 6 6 H 1.48504 * 109.46654 * 154.98694 * 3 2 1 7 7 C 1.40084 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99647 * 186.28901 * 7 2 1 9 9 C 1.40749 * 120.00169 * 6.28386 * 7 2 1 10 10 C 1.41916 * 120.04888 * 173.71883 * 9 7 2 11 11 C 1.35620 * 119.17114 * 179.97438 * 10 9 7 12 12 O 1.35398 * 120.39232 * 179.97438 * 11 10 9 13 13 N 1.37450 * 119.21404 * 0.02562 * 11 10 9 14 14 N 1.39981 * 132.36841 * 180.02562 * 13 11 10 15 15 C 1.31509 * 109.03190 * 179.97438 * 14 13 11 16 16 C 1.38433 * 109.15314 * 359.97438 * 15 14 13 17 17 C 1.37552 * 120.06075 * 359.97438 * 13 11 10 18 18 N 1.32942 * 120.85832 * 0.02562 * 17 13 11 19 19 H 0.96998 * 120.00024 * 359.97438 * 1 2 3 20 20 H 1.07997 * 120.41334 * 0.02562 * 10 9 7 21 21 H 0.96692 * 113.99865 * 90.00345 * 12 11 10 22 22 H 1.08003 * 125.42961 * 180.02562 * 15 14 13 23 23 H 1.08004 * 126.23160 * 180.26973 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.3832 2.1073 -1.3947 5 1 1.4952 2.6199 0.8028 6 1 3.5873 1.4120 0.5920 7 6 2.0075 -1.2132 -0.0005 8 1 3.0827 -1.2160 0.1019 9 6 1.3102 -2.4284 -0.1345 10 6 2.0251 -3.6469 -0.2692 11 6 1.3352 -4.8075 -0.3966 12 8 1.9922 -5.9842 -0.5271 13 7 -0.0389 -4.7750 -0.3927 14 7 -1.0066 -5.7805 -0.5025 15 6 -2.2013 -5.2343 -0.4418 16 6 -2.0675 -3.8647 -0.2910 17 6 -0.6994 -3.5757 -0.2601 18 7 -0.0258 -2.4365 -0.1351 19 1 -0.4850 0.8400 0.0004 20 1 3.1051 -3.6499 -0.2694 21 1 2.1839 -6.4229 0.3130 22 1 -3.1379 -5.7691 -0.4996 23 1 -2.8729 -3.1500 -0.2078 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261324125.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:29 Heat of formation + Delta-G solvation = 67.051104 kcal Electronic energy + Delta-G solvation = -12685.517226 eV Core-core repulsion = 10308.098763 eV Total energy + Delta-G solvation = -2377.418463 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.57573 -37.61000 -36.25467 -33.52460 -31.19800 -30.01200 -27.63247 -26.24206 -22.71202 -21.63853 -20.14537 -18.16543 -17.71474 -16.21892 -15.72498 -15.14455 -14.90995 -13.79900 -13.37650 -13.07243 -12.55831 -12.06420 -11.72416 -11.70782 -10.99255 -10.95718 -10.89194 -10.32396 -9.78106 -9.69101 -9.31278 -8.25513 -8.01087 -6.77688 -6.63671 -4.98520 1.93908 2.42517 2.92726 2.96651 2.97495 3.31979 3.70297 3.81538 4.39343 4.55331 5.40631 5.59267 5.74609 6.15296 6.34226 6.59648 6.72845 6.83606 6.86435 7.29235 7.58185 7.65367 7.96811 8.00213 8.13231 8.39857 8.93787 9.79291 9.95744 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.047816 B = 0.011067 C = 0.009029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.442322 B = 2529.403210 C = 3100.324411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.679 5.679 2 C 0.057 3.943 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.383 4.383 8 H 0.097 0.903 9 C 0.262 3.738 10 C -0.237 4.237 11 C 0.328 3.672 12 O -0.482 6.482 13 N -0.371 5.371 14 N -0.385 5.385 15 C 0.085 3.915 16 C -0.365 4.365 17 C 0.343 3.657 18 N -0.513 5.513 19 H 0.283 0.717 20 H 0.142 0.858 21 H 0.391 0.609 22 H 0.169 0.831 23 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.016 -0.611 1.455 3.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.300 5.300 2 C -0.173 4.173 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.418 4.418 8 H 0.115 0.885 9 C 0.128 3.872 10 C -0.265 4.265 11 C 0.176 3.824 12 O -0.287 6.287 13 N -0.158 5.158 14 N -0.211 5.211 15 C -0.093 4.093 16 C -0.399 4.399 17 C 0.107 3.893 18 N -0.238 5.238 19 H 0.094 0.906 20 H 0.159 0.841 21 H 0.248 0.752 22 H 0.186 0.814 23 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.886 -0.904 0.806 3.130 hybrid contribution 0.328 0.450 0.429 0.703 sum 3.214 -0.454 1.235 3.473 Atomic orbital electron populations 1.70111 1.07489 1.29034 1.23321 1.26220 0.95099 1.01730 0.94212 0.86113 0.80406 0.79871 0.79476 1.19082 1.19690 1.18119 1.19684 0.95219 0.89099 1.37776 0.88512 1.18656 0.88000 0.91207 0.89321 1.21916 1.00835 0.91207 1.12562 1.18233 0.78321 0.86543 0.99274 1.84738 1.74168 1.34599 1.35145 1.47921 1.04178 1.09492 1.54208 1.77432 0.95731 1.11155 1.36742 1.23222 0.95788 0.93915 0.96355 1.20430 0.92252 0.95257 1.32005 1.21667 0.93888 0.80424 0.93291 1.69311 1.06547 1.18188 1.29758 0.90589 0.84067 0.75221 0.81378 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -16.99 11.49 55.55 0.64 -16.35 14 2 C 0.06 1.32 5.49 -17.34 -0.10 1.23 14 3 Si 0.92 16.62 29.56 -169.99 -5.03 11.60 14 4 H -0.27 -4.81 7.11 56.52 0.40 -4.41 14 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 6 H -0.26 -4.49 7.11 56.52 0.40 -4.09 14 7 C -0.38 -9.13 9.13 -37.94 -0.35 -9.47 14 8 H 0.10 2.03 7.86 -52.49 -0.41 1.62 14 9 C 0.26 6.71 6.56 -84.74 -0.56 6.15 14 10 C -0.24 -5.31 9.71 -39.11 -0.38 -5.69 14 11 C 0.33 7.49 7.84 -15.97 -0.13 7.36 14 12 O -0.48 -9.17 13.55 -17.88 -0.24 -9.42 14 13 N -0.37 -9.46 3.94 -12.22 -0.05 -9.51 14 14 N -0.38 -9.39 12.66 30.44 0.39 -9.00 14 15 C 0.08 1.86 11.92 -17.62 -0.21 1.65 14 16 C -0.37 -8.91 10.95 -38.90 -0.43 -9.34 14 17 C 0.34 9.25 7.94 -155.68 -1.24 8.02 14 18 N -0.51 -14.27 8.01 -10.24 -0.08 -14.35 14 19 H 0.28 6.31 8.29 -40.82 -0.34 5.97 14 20 H 0.14 2.65 8.06 -52.49 -0.42 2.22 14 21 H 0.39 5.30 9.06 45.56 0.41 5.71 14 22 H 0.17 2.86 8.06 -52.48 -0.42 2.44 14 23 H 0.14 3.11 8.06 -52.48 -0.42 2.69 14 LS Contribution 219.45 15.07 3.31 3.31 Total: -1.00 -31.28 219.45 -4.84 -36.13 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -0.40 Total: 7.69 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -3.37 Total: -0.09 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.89 Total: -49.22 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.24 Total: -9.42 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.60 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -31.28 -4.84 -36.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261324125.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.178 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds