Wall clock time and date at job start Mon Mar 30 2020 02:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99925 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99415 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00021 * 3 2 1 7 7 C 1.38952 * 120.00525 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99436 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00380 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00379 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99624 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00335 * 179.97438 * 10 9 7 13 13 H 1.09004 * 112.84393 * 309.66387 * 12 10 9 14 14 C 1.53775 * 113.61544 * 80.86072 * 12 10 9 15 15 C 1.53950 * 87.01750 * 139.95343 * 14 12 10 16 16 C 1.53775 * 87.11452 * 334.63549 * 15 14 12 17 17 F 1.39901 * 113.61805 * 270.81332 * 16 15 14 18 18 F 1.39899 * 113.61312 * 139.90876 * 16 15 14 19 19 H 0.96995 * 120.00506 * 0.02562 * 1 2 3 20 20 H 0.97000 * 119.99659 * 359.97438 * 9 7 2 21 21 H 1.09000 * 113.61350 * 254.53117 * 14 12 10 22 22 H 1.09005 * 113.61401 * 25.43467 * 14 12 10 23 23 H 1.09006 * 113.66664 * 220.06804 * 15 14 12 24 24 H 1.09001 * 113.61235 * 89.20205 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0011 10 6 4.0539 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0011 12 6 5.5609 -2.3703 0.0011 13 1 5.9840 -1.7291 -0.7722 14 6 6.1769 -2.1465 1.3922 15 6 7.2232 -3.2096 1.0113 16 6 6.1769 -3.7788 0.0387 17 9 5.3408 -4.7410 0.6151 18 9 6.7147 -4.1881 -1.1862 19 1 -0.4850 0.8400 -0.0004 20 1 3.8648 -0.3632 0.0007 21 1 6.5958 -1.1495 1.5289 22 1 5.5254 -2.4491 2.2120 23 1 7.4753 -3.8874 1.8270 24 1 8.1026 -2.7987 0.5153 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306187166.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:36 Heat of formation + Delta-G solvation = -137.539775 kcal Electronic energy + Delta-G solvation = -13544.857229 eV Core-core repulsion = 10707.877853 eV Total energy + Delta-G solvation = -2836.979376 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.065 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.69305 -48.05203 -40.63447 -37.95250 -36.06414 -33.78682 -28.85494 -26.24199 -25.84631 -21.95669 -21.08022 -20.32118 -18.83241 -17.89776 -17.38437 -16.93840 -16.63054 -15.64887 -15.45288 -14.92290 -14.79648 -14.56369 -14.31521 -14.29839 -13.72540 -13.05334 -12.70081 -12.44995 -12.34524 -12.09637 -11.97928 -11.55803 -11.55552 -10.41848 -10.30763 -8.45181 -6.07797 1.29369 1.34751 1.45092 1.80027 2.21613 2.53004 2.74630 2.86996 3.08975 3.41336 3.52206 3.61493 4.20124 4.41256 4.56423 4.62424 4.77589 4.92591 5.24134 5.49520 5.88575 6.51545 6.80800 7.30784 7.87070 8.72343 Molecular weight = 205.07amu Principal moments of inertia in cm(-1) A = 0.054896 B = 0.009923 C = 0.009095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.933619 B = 2821.076640 C = 3077.781518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.224 1.224 7 C -0.336 4.336 8 H 0.051 0.949 9 N -0.577 5.577 10 C 0.449 3.551 11 O -0.619 6.619 12 C -0.164 4.164 13 H 0.165 0.835 14 C -0.113 4.113 15 C -0.131 4.131 16 C 0.248 3.752 17 F -0.190 7.190 18 F -0.203 7.203 19 H 0.281 0.719 20 H 0.393 0.607 21 H 0.137 0.863 22 H 0.077 0.923 23 H 0.110 0.890 24 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.598 3.024 2.414 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.212 4.212 3 Si 0.786 3.214 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.147 1.147 7 C -0.465 4.465 8 H 0.070 0.930 9 N -0.217 5.217 10 C 0.236 3.764 11 O -0.504 6.504 12 C -0.185 4.185 13 H 0.183 0.817 14 C -0.150 4.150 15 C -0.168 4.168 16 C 0.211 3.789 17 F -0.171 7.171 18 F -0.184 7.184 19 H 0.091 0.909 20 H 0.229 0.771 21 H 0.155 0.845 22 H 0.096 0.904 23 H 0.129 0.871 24 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 17.972 2.387 2.399 18.288 hybrid contribution -0.789 0.308 -0.348 0.916 sum 17.183 2.695 2.051 17.513 Atomic orbital electron populations 1.69804 1.08311 1.29518 1.49515 1.26199 0.96514 1.02948 0.95585 0.85340 0.79749 0.76197 0.80100 1.18101 1.19829 1.14713 1.19021 0.81469 0.95000 1.50983 0.93038 1.41951 1.05771 1.07378 1.66628 1.20534 0.90089 0.83653 0.82094 1.90619 1.71223 1.32888 1.55651 1.24158 0.91736 0.97600 1.05055 0.81724 1.22867 0.96566 1.03127 0.92469 1.24094 0.97296 0.97590 0.97863 1.22642 0.90918 0.84561 0.80753 1.93022 1.73714 1.66473 1.83895 1.92956 1.86029 1.92441 1.46928 0.90943 0.77097 0.84458 0.90399 0.87142 0.83068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 13.96 21.66 0.30 -55.89 14 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 14 3 Si 0.97 37.78 27.74 68.60 1.90 39.68 14 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 14 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 14 6 H -0.22 -7.11 6.52 99.48 0.65 -6.46 14 7 C -0.34 -19.89 10.16 84.04 0.85 -19.03 14 8 H 0.05 3.67 7.39 -2.91 -0.02 3.65 14 9 N -0.58 -27.36 5.09 -306.99 -1.56 -28.92 14 10 C 0.45 20.96 7.25 87.66 0.64 21.60 14 11 O -0.62 -36.38 14.35 -3.07 -0.04 -36.42 14 12 C -0.16 -4.99 4.03 -11.01 -0.04 -5.04 14 13 H 0.17 3.71 8.14 -2.38 -0.02 3.69 14 14 C -0.11 -2.40 7.62 31.18 0.24 -2.16 14 15 C -0.13 -2.34 7.87 31.18 0.25 -2.10 14 16 C 0.25 7.83 3.01 31.12 0.09 7.92 14 17 F -0.19 -7.92 15.23 44.97 0.68 -7.23 14 18 F -0.20 -6.57 17.41 44.97 0.78 -5.78 14 19 H 0.28 15.39 8.31 -92.71 -0.77 14.62 14 20 H 0.39 14.96 5.76 -92.71 -0.53 14.43 14 21 H 0.14 1.76 8.14 -2.39 -0.02 1.74 14 22 H 0.08 2.02 8.09 -2.38 -0.02 2.00 14 23 H 0.11 1.70 8.14 -2.38 -0.02 1.68 14 24 H 0.15 1.55 8.14 -2.39 -0.02 1.53 14 Total: -1.00 -80.67 222.07 5.19 -75.47 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.64 Total: 18.19 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 2.49 Total: 0.91 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -1.26 Total: -84.81 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.04 Total: -36.42 kcal Atomic # 9 Polarization: -14.48 SS G_CDS: 1.47 Total: -13.02 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.90 Total: 39.68 kcal Total: -80.67 5.19 -75.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306187166.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.069 kcal (2) G-P(sol) polarization free energy of solvation -80.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds