Wall clock time and date at job start Mon Mar 30 2020 02:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00509 * 2 1 4 4 H 1.48496 * 109.46788 * 270.00011 * 3 2 1 5 5 H 1.48503 * 109.46865 * 29.99359 * 3 2 1 6 6 H 1.48493 * 109.47152 * 149.99559 * 3 2 1 7 7 C 1.38954 * 119.99355 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00491 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99613 * 180.02562 * 7 2 1 10 10 C 1.34783 * 120.00295 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99171 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00279 * 179.97438 * 10 9 7 13 13 H 1.09003 * 112.84682 * 48.80477 * 12 10 9 14 14 C 1.54049 * 113.69721 * 277.53547 * 12 10 9 15 15 C 1.53786 * 86.98426 * 220.01168 * 14 12 10 16 16 C 1.53781 * 87.17350 * 25.42668 * 15 14 12 17 17 F 1.39903 * 113.61367 * 89.07581 * 16 15 14 18 18 F 1.39901 * 113.61494 * 219.89718 * 16 15 14 19 19 H 0.97010 * 120.00004 * 0.02562 * 1 2 3 20 20 H 0.97001 * 120.00074 * 359.97438 * 9 7 2 21 21 H 1.08992 * 113.69868 * 105.49278 * 14 12 10 22 22 H 1.09000 * 113.61076 * 334.51038 * 14 12 10 23 23 H 1.09002 * 113.61357 * 270.83585 * 15 14 12 24 24 H 1.09002 * 113.61608 * 140.01747 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4400 0.7001 7 6 2.0087 -1.2035 0.0005 8 1 1.4687 -2.1387 0.0014 9 7 3.3797 -1.2035 0.0011 10 6 4.0536 -2.3708 0.0011 11 8 3.4470 -3.4211 0.0011 12 6 5.5605 -2.3708 0.0011 13 1 5.9838 -1.7093 0.7569 14 6 6.1797 -2.1859 -1.3973 15 6 7.2242 -3.2365 -0.9847 16 6 6.1765 -3.7799 0.0011 17 9 5.3410 -4.7568 -0.5511 18 9 6.7128 -4.1589 1.2364 19 1 -0.4851 0.8401 -0.0004 20 1 3.8647 -0.3635 0.0007 21 1 6.5999 -1.1939 -1.5627 22 1 5.5296 -2.5120 -2.2092 23 1 8.1023 -2.8116 -0.4984 24 1 7.4783 -3.9358 -1.7813 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306187167.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:39 Heat of formation + Delta-G solvation = -112.514013 kcal Electronic energy + Delta-G solvation = -13541.464971 eV Core-core repulsion = 10705.570794 eV Total energy + Delta-G solvation = -2835.894177 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.065 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.36470 -46.68090 -38.93732 -36.54865 -34.01101 -31.69186 -27.33927 -24.80920 -24.33382 -20.47657 -19.37163 -18.53149 -17.47192 -16.39166 -15.83639 -15.43826 -14.88400 -14.06104 -13.87863 -13.47620 -13.22392 -13.05373 -12.90735 -12.43684 -12.17575 -11.61472 -11.34408 -11.11640 -10.99625 -10.62004 -10.37238 -10.00174 -9.62329 -8.53119 -8.23342 -6.35627 -3.87142 2.98997 3.03138 3.12143 3.46773 3.81017 3.99896 4.06221 4.33201 4.52973 4.64350 4.85993 5.21543 5.45181 5.49883 5.66358 5.75280 5.79195 5.86662 6.28509 7.50879 8.08420 8.52785 8.89205 9.36453 9.74934 10.77181 Molecular weight = 205.07amu Principal moments of inertia in cm(-1) A = 0.054827 B = 0.009908 C = 0.009094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.575423 B = 2825.315508 C = 3078.207180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.043 3.957 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.121 0.879 9 N -0.581 5.581 10 C 0.454 3.546 11 O -0.560 6.560 12 C -0.162 4.162 13 H 0.125 0.875 14 C -0.121 4.121 15 C -0.165 4.165 16 C 0.281 3.719 17 F -0.157 7.157 18 F -0.196 7.196 19 H 0.274 0.726 20 H 0.371 0.629 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.821 0.294 -2.001 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.138 0.862 9 N -0.219 5.219 10 C 0.239 3.761 11 O -0.442 6.442 12 C -0.185 4.185 13 H 0.143 0.857 14 C -0.159 4.159 15 C -0.203 4.203 16 C 0.244 3.756 17 F -0.138 7.138 18 F -0.177 7.177 19 H 0.085 0.915 20 H 0.204 0.796 21 H 0.110 0.890 22 H 0.117 0.883 23 H 0.128 0.872 24 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.163 -0.336 -1.977 14.305 hybrid contribution 0.484 1.283 0.206 1.386 sum 14.648 0.947 -1.771 14.785 Atomic orbital electron populations 1.69624 1.05679 1.27619 1.48795 1.25053 0.95510 0.98035 0.97459 0.86663 0.79826 0.83938 0.78950 1.19509 1.20073 1.19434 1.19469 0.79145 0.96753 1.48214 0.86183 1.42173 1.07535 1.05995 1.66201 1.19206 0.87000 0.84918 0.84976 1.90647 1.68892 1.30726 1.53891 1.23929 0.97499 0.96340 1.00730 0.85709 1.22811 0.96984 1.00212 0.95911 1.24061 0.97988 0.99317 0.98973 1.21717 0.88975 0.85494 0.79416 1.93093 1.72221 1.64070 1.84375 1.92974 1.86162 1.93097 1.45486 0.91506 0.79561 0.88995 0.88272 0.87214 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 13.96 55.50 0.77 -24.76 14 2 C 0.04 1.17 5.50 -17.47 -0.10 1.07 14 3 Si 0.88 19.10 27.74 -169.99 -4.71 14.38 14 4 H -0.27 -5.70 7.11 56.52 0.40 -5.29 14 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 14 6 H -0.27 -5.30 6.52 56.52 0.37 -4.93 14 7 C -0.31 -8.71 10.16 -14.93 -0.15 -8.86 14 8 H 0.12 3.91 7.39 -52.49 -0.39 3.52 14 9 N -0.58 -13.87 5.09 -10.96 -0.06 -13.93 14 10 C 0.45 10.53 7.27 -10.98 -0.08 10.45 14 11 O -0.56 -15.59 14.33 5.54 0.08 -15.51 14 12 C -0.16 -2.72 4.04 -90.82 -0.37 -3.08 14 13 H 0.12 1.74 8.14 -51.93 -0.42 1.31 14 14 C -0.12 -1.56 7.63 -25.77 -0.20 -1.75 14 15 C -0.17 -1.89 7.86 -25.92 -0.20 -2.09 14 16 C 0.28 4.71 3.01 -25.92 -0.08 4.63 14 17 F -0.16 -3.21 15.20 2.25 0.03 -3.17 14 18 F -0.20 -3.36 17.41 2.25 0.04 -3.32 14 19 H 0.27 7.34 8.31 -40.82 -0.34 7.00 14 20 H 0.37 7.68 5.76 -40.82 -0.24 7.44 14 21 H 0.09 0.91 8.14 -51.93 -0.42 0.48 14 22 H 0.10 1.40 8.10 -51.93 -0.42 0.98 14 23 H 0.11 0.96 8.14 -51.93 -0.42 0.54 14 24 H 0.09 0.94 8.14 -51.93 -0.42 0.52 14 LS Contribution 222.05 15.07 3.35 3.35 Total: -1.00 -33.05 222.05 -3.57 -36.62 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -1.90 Total: 5.97 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.17 Total: 0.36 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.72 Total: -38.69 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.08 Total: -15.51 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.07 Total: -6.49 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -33.05 -3.57 -36.62 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306187167.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.893 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds