Wall clock time and date at job start Mon Mar 30 2020 02:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00509 * 2 1 4 4 H 1.48496 * 109.46788 * 270.00011 * 3 2 1 5 5 H 1.48503 * 109.46865 * 29.99359 * 3 2 1 6 6 H 1.48493 * 109.47152 * 149.99559 * 3 2 1 7 7 C 1.38954 * 119.99355 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00491 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99613 * 180.02562 * 7 2 1 10 10 C 1.34783 * 120.00295 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99171 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00279 * 179.97438 * 10 9 7 13 13 H 1.09003 * 112.84682 * 48.80477 * 12 10 9 14 14 C 1.54049 * 113.69721 * 277.53547 * 12 10 9 15 15 C 1.53786 * 86.98426 * 220.01168 * 14 12 10 16 16 C 1.53781 * 87.17350 * 25.42668 * 15 14 12 17 17 F 1.39903 * 113.61367 * 89.07581 * 16 15 14 18 18 F 1.39901 * 113.61494 * 219.89718 * 16 15 14 19 19 H 0.97010 * 120.00004 * 0.02562 * 1 2 3 20 20 H 0.97001 * 120.00074 * 359.97438 * 9 7 2 21 21 H 1.08992 * 113.69868 * 105.49278 * 14 12 10 22 22 H 1.09000 * 113.61076 * 334.51038 * 14 12 10 23 23 H 1.09002 * 113.61357 * 270.83585 * 15 14 12 24 24 H 1.09002 * 113.61608 * 140.01747 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4400 0.7001 7 6 2.0087 -1.2035 0.0005 8 1 1.4687 -2.1387 0.0014 9 7 3.3797 -1.2035 0.0011 10 6 4.0536 -2.3708 0.0011 11 8 3.4470 -3.4211 0.0011 12 6 5.5605 -2.3708 0.0011 13 1 5.9838 -1.7093 0.7569 14 6 6.1797 -2.1859 -1.3973 15 6 7.2242 -3.2365 -0.9847 16 6 6.1765 -3.7799 0.0011 17 9 5.3410 -4.7568 -0.5511 18 9 6.7128 -4.1589 1.2364 19 1 -0.4851 0.8401 -0.0004 20 1 3.8647 -0.3635 0.0007 21 1 6.5999 -1.1939 -1.5627 22 1 5.5296 -2.5120 -2.2092 23 1 8.1023 -2.8116 -0.4984 24 1 7.4783 -3.9358 -1.7813 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306187167.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:39 Heat of formation + Delta-G solvation = -137.528215 kcal Electronic energy + Delta-G solvation = -13542.549668 eV Core-core repulsion = 10705.570794 eV Total energy + Delta-G solvation = -2836.978874 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.065 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.69325 -48.04870 -40.62787 -37.94899 -36.06190 -33.78705 -28.85639 -26.24267 -25.84190 -21.95270 -21.08528 -20.31647 -18.83254 -17.89322 -17.38105 -16.94300 -16.62915 -15.63397 -15.46210 -14.92851 -14.79307 -14.56884 -14.31079 -14.29556 -13.71904 -13.05570 -12.70358 -12.46980 -12.31813 -12.09638 -11.97816 -11.57313 -11.54412 -10.41907 -10.30503 -8.45288 -6.07788 1.29507 1.34347 1.44992 1.79904 2.21514 2.52901 2.75066 2.87192 3.08872 3.41684 3.52007 3.61538 4.19936 4.41318 4.56594 4.62522 4.77708 4.92938 5.24296 5.49510 5.88581 6.51498 6.80764 7.30766 7.87043 8.72255 Molecular weight = 205.07amu Principal moments of inertia in cm(-1) A = 0.054827 B = 0.009908 C = 0.009094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.575423 B = 2825.315508 C = 3078.207180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.968 3.032 4 H -0.252 1.252 5 H -0.275 1.275 6 H -0.228 1.228 7 C -0.336 4.336 8 H 0.052 0.948 9 N -0.577 5.577 10 C 0.449 3.551 11 O -0.618 6.618 12 C -0.164 4.164 13 H 0.164 0.836 14 C -0.112 4.112 15 C -0.131 4.131 16 C 0.248 3.752 17 F -0.190 7.190 18 F -0.203 7.203 19 H 0.281 0.719 20 H 0.393 0.607 21 H 0.138 0.862 22 H 0.078 0.922 23 H 0.151 0.849 24 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.582 2.971 -2.385 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.213 4.213 3 Si 0.787 3.213 4 H -0.176 1.176 5 H -0.200 1.200 6 H -0.152 1.152 7 C -0.465 4.465 8 H 0.070 0.930 9 N -0.217 5.217 10 C 0.236 3.764 11 O -0.503 6.503 12 C -0.186 4.186 13 H 0.182 0.818 14 C -0.150 4.150 15 C -0.169 4.169 16 C 0.211 3.789 17 F -0.171 7.171 18 F -0.184 7.184 19 H 0.091 0.909 20 H 0.229 0.771 21 H 0.156 0.844 22 H 0.096 0.904 23 H 0.169 0.831 24 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.955 2.334 -2.364 18.259 hybrid contribution -0.782 0.313 0.358 0.916 sum 17.172 2.647 -2.006 17.491 Atomic orbital electron populations 1.69811 1.08307 1.29509 1.49504 1.26202 0.96518 1.02950 0.95585 0.85328 0.79529 0.76176 0.80269 1.17598 1.19958 1.15158 1.19022 0.81465 0.95004 1.50994 0.93031 1.41961 1.05781 1.07382 1.66624 1.20534 0.90084 0.83652 0.82107 1.90621 1.71205 1.32880 1.55643 1.24201 0.91729 0.97693 1.04951 0.81827 1.22885 0.96508 1.03235 0.92324 1.24065 0.97286 0.98111 0.97407 1.22649 0.90964 0.84625 0.80666 1.93024 1.73746 1.65445 1.84864 1.92956 1.86092 1.93139 1.46194 0.90944 0.77105 0.84379 0.90366 0.83082 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.96 21.66 0.30 -55.87 14 2 C -0.01 -0.74 5.50 84.93 0.47 -0.28 14 3 Si 0.97 37.83 27.74 68.60 1.90 39.73 14 4 H -0.25 -9.17 7.11 99.48 0.71 -8.46 14 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 14 6 H -0.23 -7.38 6.52 99.48 0.65 -6.74 14 7 C -0.34 -19.91 10.16 84.04 0.85 -19.05 14 8 H 0.05 3.68 7.39 -2.91 -0.02 3.65 14 9 N -0.58 -27.41 5.09 -306.98 -1.56 -28.97 14 10 C 0.45 20.97 7.27 87.65 0.64 21.61 14 11 O -0.62 -36.35 14.33 -3.08 -0.04 -36.40 14 12 C -0.16 -5.01 4.04 -10.92 -0.04 -5.05 14 13 H 0.16 3.72 8.14 -2.39 -0.02 3.70 14 14 C -0.11 -2.37 7.63 31.21 0.24 -2.13 14 15 C -0.13 -2.35 7.86 31.12 0.24 -2.10 14 16 C 0.25 7.82 3.01 31.12 0.09 7.92 14 17 F -0.19 -7.91 15.20 44.97 0.68 -7.23 14 18 F -0.20 -6.59 17.41 44.97 0.78 -5.80 14 19 H 0.28 15.39 8.31 -92.70 -0.77 14.62 14 20 H 0.39 15.00 5.76 -92.71 -0.53 14.47 14 21 H 0.14 1.73 8.14 -2.39 -0.02 1.72 14 22 H 0.08 2.02 8.10 -2.39 -0.02 2.00 14 23 H 0.15 1.55 8.14 -2.39 -0.02 1.53 14 24 H 0.11 1.70 8.14 -2.39 -0.02 1.68 14 Total: -1.00 -80.65 222.05 5.20 -75.45 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.64 Total: 18.18 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 2.49 Total: 0.91 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -1.26 Total: -84.85 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.04 Total: -36.40 kcal Atomic # 9 Polarization: -14.50 SS G_CDS: 1.47 Total: -13.03 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.90 Total: 39.73 kcal Total: -80.65 5.20 -75.45 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306187167.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.077 kcal (2) G-P(sol) polarization free energy of solvation -80.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds