Wall clock time and date at job start Mon Mar 30 2020 02:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.46951 * 274.99657 * 3 2 1 5 5 H 1.48497 * 109.47554 * 34.99813 * 3 2 1 6 6 H 1.48500 * 109.46966 * 155.00119 * 3 2 1 7 7 C 1.40053 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99645 * 174.81018 * 7 2 1 9 9 C 1.46375 * 120.00201 * 354.81662 * 7 2 1 10 10 O 1.21685 * 119.99762 * 5.16642 * 9 7 2 11 11 N 1.34767 * 119.99926 * 185.16282 * 9 7 2 12 12 C 1.46500 * 120.00059 * 175.31298 * 11 9 7 13 13 C 1.53003 * 115.54924 * 65.50844 * 12 11 9 14 14 F 1.39899 * 109.46941 * 64.56508 * 13 12 11 15 15 F 1.39895 * 109.47108 * 184.57042 * 13 12 11 16 16 C 1.52996 * 117.50079 * 279.84222 * 12 11 9 17 17 C 1.52998 * 117.50425 * 211.18429 * 12 11 9 18 18 H 0.97001 * 120.00252 * 359.97438 * 1 2 3 19 19 H 0.97003 * 120.00206 * 355.04894 * 11 9 7 20 20 H 1.09006 * 109.46848 * 304.56956 * 13 12 11 21 21 H 1.09000 * 117.49910 * 359.97438 * 16 12 11 22 22 H 1.09003 * 117.50099 * 145.01509 * 16 12 11 23 23 H 1.09004 * 117.49891 * 214.98686 * 17 12 11 24 24 H 1.09002 * 117.49388 * 359.97016 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3825 2.1074 -1.3948 5 1 1.4950 2.6199 0.8030 6 1 3.5870 1.4120 0.5917 7 6 2.0069 -1.2129 0.0005 8 1 3.0836 -1.2148 -0.0841 9 6 1.2796 -2.4779 0.1156 10 8 0.0627 -2.4822 0.1161 11 7 1.9576 -3.6378 0.2210 12 6 1.2333 -4.8925 0.4392 13 6 0.3224 -5.3365 -0.7071 14 9 1.0981 -5.6189 -1.8366 15 9 -0.3813 -6.4840 -0.3258 16 6 0.7777 -5.2063 1.8656 17 6 1.9395 -5.9852 1.2442 18 1 -0.4850 0.8400 0.0004 19 1 2.9249 -3.6426 0.1484 20 1 -0.3827 -4.5388 -0.9408 21 1 1.0172 -4.4795 2.6418 22 1 -0.1708 -5.7294 1.9875 23 1 1.7551 -7.0205 0.9573 24 1 2.9433 -5.7708 1.6110 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306478421.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:18 Heat of formation + Delta-G solvation = -142.957133 kcal Electronic energy + Delta-G solvation = -13517.905127 eV Core-core repulsion = 10680.690837 eV Total energy + Delta-G solvation = -2837.214290 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.065 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -50.00794 -48.00259 -39.94582 -37.62894 -34.66119 -33.11702 -28.70393 -27.77111 -23.64909 -22.92343 -20.86043 -19.31490 -18.51057 -18.19463 -17.94573 -17.33340 -16.22136 -15.85268 -15.14459 -14.81848 -14.55330 -14.46219 -14.33333 -13.67269 -13.20521 -12.80840 -12.68282 -12.61634 -12.47430 -12.01145 -11.80697 -11.27186 -10.93463 -9.87317 -9.60327 -8.32594 -6.88395 1.40798 1.41492 1.57615 2.20728 2.37085 2.51553 2.58509 2.98914 3.29336 3.42005 3.69388 3.79065 4.22947 4.30127 4.53933 4.63537 4.90351 5.13183 5.31015 5.81462 6.09589 6.21039 6.84821 7.45009 8.43070 8.62781 Molecular weight = 205.07amu Principal moments of inertia in cm(-1) A = 0.056735 B = 0.009333 C = 0.009094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.402048 B = 2999.364262 C = 3078.222921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.033 3.967 3 Si 0.996 3.004 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.571 4.571 8 H 0.088 0.912 9 C 0.542 3.458 10 O -0.618 6.618 11 N -0.716 5.716 12 C 0.027 3.973 13 C 0.293 3.707 14 F -0.208 7.208 15 F -0.199 7.199 16 C -0.160 4.160 17 C -0.127 4.127 18 H 0.276 0.724 19 H 0.401 0.599 20 H 0.099 0.901 21 H 0.094 0.906 22 H 0.108 0.892 23 H 0.123 0.877 24 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.325 -7.232 1.912 9.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.183 4.183 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.608 4.608 8 H 0.106 0.894 9 C 0.347 3.653 10 O -0.505 6.505 11 N -0.370 5.370 12 C -0.064 4.064 13 C 0.238 3.762 14 F -0.190 7.190 15 F -0.181 7.181 16 C -0.199 4.199 17 C -0.164 4.164 18 H 0.085 0.915 19 H 0.237 0.763 20 H 0.116 0.884 21 H 0.112 0.888 22 H 0.126 0.874 23 H 0.141 0.859 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.297 -7.174 1.905 8.576 hybrid contribution 0.363 0.666 -0.273 0.806 sum 4.660 -6.508 1.633 8.169 Atomic orbital electron populations 1.70156 1.09419 1.29078 1.35984 1.26905 0.95489 1.04761 0.91171 0.85023 0.78978 0.75297 0.79133 1.18888 1.19787 1.17198 1.21393 0.95170 0.89969 1.54230 0.89385 1.18629 0.86971 0.83694 0.76020 1.90544 1.15742 1.87172 1.57025 1.45204 1.09251 1.03320 1.79231 1.21214 1.02404 0.90492 0.92250 1.21335 0.88506 0.83927 0.82467 1.92916 1.77291 1.94650 1.54116 1.92906 1.79645 1.53971 1.91563 1.23317 1.00237 1.02642 0.93704 1.23431 0.98392 0.95807 0.98731 0.91452 0.76315 0.88377 0.88796 0.87352 0.85893 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.57 11.85 21.84 0.26 -48.31 14 2 C 0.03 1.76 5.50 85.31 0.47 2.23 14 3 Si 1.00 39.86 29.56 68.60 2.03 41.89 14 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 14 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 14 6 H -0.25 -9.24 7.11 99.48 0.71 -8.54 14 7 C -0.57 -31.33 9.54 24.83 0.24 -31.09 14 8 H 0.09 4.33 7.85 -2.91 -0.02 4.31 14 9 C 0.54 30.09 7.64 86.36 0.66 30.75 14 10 O -0.62 -39.14 13.74 -4.30 -0.06 -39.20 14 11 N -0.72 -31.11 5.45 -427.17 -2.33 -33.44 14 12 C 0.03 1.01 2.06 3.60 0.01 1.02 14 13 C 0.29 11.56 5.33 71.98 0.38 11.95 14 14 F -0.21 -8.20 17.34 44.97 0.78 -7.42 14 15 F -0.20 -7.00 15.92 44.97 0.72 -6.28 14 16 C -0.16 -5.32 9.88 30.61 0.30 -5.02 14 17 C -0.13 -3.41 9.92 30.61 0.30 -3.11 14 18 H 0.28 14.84 8.29 -92.71 -0.77 14.07 14 19 H 0.40 15.07 8.81 -92.71 -0.82 14.25 14 20 H 0.10 4.52 6.85 -2.38 -0.02 4.50 14 21 H 0.09 3.28 8.14 -2.39 -0.02 3.26 14 22 H 0.11 3.37 7.65 -2.39 -0.02 3.35 14 23 H 0.12 2.84 7.92 -2.38 -0.02 2.82 14 24 H 0.12 2.83 8.14 -2.39 -0.02 2.81 14 Total: -1.00 -68.70 228.68 4.18 -64.52 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.42 Total: 21.51 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 2.36 Total: 6.73 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -2.07 Total: -81.75 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.06 Total: -39.20 kcal Atomic # 9 Polarization: -15.19 SS G_CDS: 1.50 Total: -13.70 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -68.70 4.18 -64.52 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306478421.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.436 kcal (2) G-P(sol) polarization free energy of solvation -68.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds