Wall clock time and date at job start Mon Mar 30 2020 02:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39647 * 120.14014 * 339.51549 * 3 2 1 5 5 C 1.37933 * 119.90055 * 180.02562 * 4 3 2 6 6 C 1.38345 * 120.17854 * 359.97090 * 5 4 3 7 7 C 1.38555 * 120.28149 * 0.02562 * 6 5 4 8 8 F 1.35099 * 119.95529 * 179.97438 * 7 6 5 9 9 C 1.38205 * 120.09903 * 0.02562 * 7 6 5 10 10 C 1.50695 * 120.09117 * 179.70702 * 9 7 6 11 11 C 1.50702 * 109.47433 * 89.99873 * 10 9 7 12 12 H 1.07995 * 119.99445 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99926 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00300 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99761 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47238 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46683 * 120.00824 * 15 13 11 18 18 H 1.48502 * 109.47224 * 240.00250 * 15 13 11 19 19 H 1.08006 * 120.05415 * 0.02562 * 4 3 2 20 20 H 1.07996 * 119.91341 * 179.97438 * 5 4 3 21 21 H 1.08007 * 119.86274 * 179.97438 * 6 5 4 22 22 H 1.09001 * 109.46747 * 209.99860 * 10 9 7 23 23 H 1.09000 * 109.47510 * 329.99680 * 10 9 7 24 24 H 0.97000 * 119.99686 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -1.1303 0.4226 5 6 4.6490 -1.1241 0.4211 6 6 5.3390 -0.0008 0.0015 7 6 4.6503 1.1254 -0.4194 8 9 5.3307 2.2189 -0.8273 9 6 3.2683 1.1322 -0.4216 10 6 2.5195 2.3595 -0.8732 11 6 2.2696 2.2779 -2.3571 12 1 2.6178 1.4226 -2.9170 13 6 1.5955 3.2946 -2.9996 14 7 1.1710 4.3359 -2.3175 15 14 1.2863 3.1938 -4.8391 16 1 1.8605 1.9310 -5.3690 17 1 -0.1758 3.2191 -5.0973 18 1 1.9281 4.3510 -5.5131 19 1 2.7333 -2.0087 0.7502 20 1 5.1919 -1.9985 0.7483 21 1 6.4190 -0.0014 0.0028 22 1 1.5667 2.4178 -0.3469 23 1 3.1113 3.2479 -0.6527 24 1 0.6971 5.0514 -2.7697 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306590198.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:25 Heat of formation + Delta-G solvation = -3.468518 kcal Electronic energy + Delta-G solvation = -12324.967908 eV Core-core repulsion = 9924.571523 eV Total energy + Delta-G solvation = -2400.396385 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.26976 -38.96725 -35.75906 -33.63910 -31.56981 -30.47865 -27.37787 -23.97196 -23.14058 -20.89628 -18.58182 -16.48846 -16.21701 -15.66801 -15.39052 -14.95925 -14.49505 -13.38445 -13.33109 -12.86014 -12.60847 -12.32863 -12.14858 -11.67033 -11.57697 -11.25847 -11.09890 -10.64711 -10.60324 -9.79533 -9.60230 -8.52847 -8.49299 -8.12848 -6.11315 -4.16485 1.06627 1.58231 3.26869 3.27708 3.33652 3.35681 3.39717 4.21473 4.35312 4.42391 4.76573 5.08342 5.20315 5.30798 5.35541 5.61625 6.02296 6.27957 6.40995 6.47334 6.61052 7.16174 7.36489 7.46081 7.81697 8.08539 8.14629 8.86418 9.48120 10.98952 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.031021 B = 0.011905 C = 0.009808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.411693 B = 2351.466229 C = 2854.150437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.271 3.729 3 C -0.013 4.013 4 C -0.086 4.086 5 C -0.121 4.121 6 C -0.130 4.130 7 C 0.093 3.907 8 F -0.129 7.129 9 C -0.023 4.023 10 C 0.041 3.959 11 C -0.516 4.516 12 H 0.060 0.940 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.281 1.281 19 H 0.130 0.870 20 H 0.133 0.867 21 H 0.133 0.867 22 H 0.036 0.964 23 H 0.042 0.958 24 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 -9.071 4.966 13.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.044 4.044 3 C -0.017 4.017 4 C -0.106 4.106 5 C -0.139 4.139 6 C -0.150 4.150 7 C 0.074 3.926 8 F -0.108 7.108 9 C -0.026 4.026 10 C 0.005 3.995 11 C -0.554 4.554 12 H 0.078 0.922 13 C -0.140 4.140 14 N -0.527 5.527 15 Si 0.725 3.275 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.207 1.207 19 H 0.148 0.852 20 H 0.151 0.849 21 H 0.151 0.849 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.294 -8.854 4.932 11.930 hybrid contribution 0.377 0.311 -1.152 1.251 sum 6.671 -8.543 3.780 11.479 Atomic orbital electron populations 1.81123 1.12088 1.07819 1.08714 1.25298 0.92401 0.93275 0.93446 1.15717 0.84894 0.95260 1.05792 1.21087 0.94275 0.96662 0.98616 1.20666 0.93390 0.97998 1.01886 1.21277 1.00668 0.92594 1.00466 1.17339 0.89342 0.84479 1.01458 1.91509 1.79251 1.51992 1.88014 1.20879 0.92315 0.97626 0.91800 1.18464 0.95169 0.88708 0.97188 1.20929 1.37203 1.05816 0.91442 0.92224 1.24978 0.95217 0.95116 0.98657 1.69956 1.37955 1.08781 1.35974 0.86440 0.78033 0.78238 0.84832 1.19523 1.20853 1.20710 0.85169 0.84883 0.84863 0.94628 0.93948 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.27 18.54 41.84 0.78 -8.49 14 2 C 0.27 5.49 13.80 -22.47 -0.31 5.18 14 3 C -0.01 -0.24 5.73 -106.94 -0.61 -0.85 14 4 C -0.09 -1.15 9.75 -39.17 -0.38 -1.53 14 5 C -0.12 -1.42 10.03 -39.65 -0.40 -1.81 14 6 C -0.13 -1.77 10.02 -39.43 -0.39 -2.16 14 7 C 0.09 1.69 7.23 -39.48 -0.29 1.41 14 8 F -0.13 -2.56 16.47 2.25 0.04 -2.53 14 9 C -0.02 -0.47 5.11 -104.13 -0.53 -1.00 14 10 C 0.04 1.06 4.52 -29.04 -0.13 0.93 14 11 C -0.52 -14.42 9.09 -34.44 -0.31 -14.73 14 12 H 0.06 1.64 7.74 -52.49 -0.41 1.24 14 13 C 0.06 1.79 5.46 -17.82 -0.10 1.70 14 14 N -0.89 -26.50 13.29 55.43 0.74 -25.77 14 15 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 14 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 14 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 14 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 14 19 H 0.13 1.37 8.06 -52.48 -0.42 0.95 14 20 H 0.13 1.06 8.06 -52.49 -0.42 0.64 14 21 H 0.13 1.42 8.06 -52.48 -0.42 1.00 14 22 H 0.04 0.97 7.09 -51.93 -0.37 0.61 14 23 H 0.04 1.14 7.64 -51.93 -0.40 0.75 14 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 14 LS Contribution 234.85 15.07 3.54 3.54 Total: -1.00 -30.93 234.85 -4.96 -35.89 By element: Atomic # 1 Polarization: -5.02 SS G_CDS: -1.57 Total: -6.60 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.46 Total: -12.89 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 1.51 Total: -34.26 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.93 -4.96 -35.89 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306590198.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.424 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds