Wall clock time and date at job start Mon Mar 30 2020 02:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39647 * 120.14014 * 339.51549 * 3 2 1 5 5 C 1.37933 * 119.90055 * 180.02562 * 4 3 2 6 6 C 1.38345 * 120.17854 * 359.97090 * 5 4 3 7 7 C 1.38555 * 120.28149 * 0.02562 * 6 5 4 8 8 F 1.35099 * 119.95529 * 179.97438 * 7 6 5 9 9 C 1.38205 * 120.09903 * 0.02562 * 7 6 5 10 10 C 1.50695 * 120.09117 * 179.70702 * 9 7 6 11 11 C 1.50702 * 109.47433 * 89.99873 * 10 9 7 12 12 H 1.07995 * 119.99445 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99926 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00300 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99761 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47238 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46683 * 120.00824 * 15 13 11 18 18 H 1.48502 * 109.47224 * 240.00250 * 15 13 11 19 19 H 1.08006 * 120.05415 * 0.02562 * 4 3 2 20 20 H 1.07996 * 119.91341 * 179.97438 * 5 4 3 21 21 H 1.08007 * 119.86274 * 179.97438 * 6 5 4 22 22 H 1.09001 * 109.46747 * 209.99860 * 10 9 7 23 23 H 1.09000 * 109.47510 * 329.99680 * 10 9 7 24 24 H 0.97000 * 119.99686 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -1.1303 0.4226 5 6 4.6490 -1.1241 0.4211 6 6 5.3390 -0.0008 0.0015 7 6 4.6503 1.1254 -0.4194 8 9 5.3307 2.2189 -0.8273 9 6 3.2683 1.1322 -0.4216 10 6 2.5195 2.3595 -0.8732 11 6 2.2696 2.2779 -2.3571 12 1 2.6178 1.4226 -2.9170 13 6 1.5955 3.2946 -2.9996 14 7 1.1710 4.3359 -2.3175 15 14 1.2863 3.1938 -4.8391 16 1 1.8605 1.9310 -5.3690 17 1 -0.1758 3.2191 -5.0973 18 1 1.9281 4.3510 -5.5131 19 1 2.7333 -2.0087 0.7502 20 1 5.1919 -1.9985 0.7483 21 1 6.4190 -0.0014 0.0028 22 1 1.5667 2.4178 -0.3469 23 1 3.1113 3.2479 -0.6527 24 1 0.6971 5.0514 -2.7697 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306590198.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:25 Heat of formation + Delta-G solvation = -22.437058 kcal Electronic energy + Delta-G solvation = -12325.790445 eV Core-core repulsion = 9924.571523 eV Total energy + Delta-G solvation = -2401.218923 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.70013 -40.28105 -37.32617 -35.58994 -33.27413 -31.77466 -29.15593 -25.70286 -24.59972 -22.38744 -19.92355 -18.64923 -17.61926 -17.01533 -16.82878 -16.45551 -16.20382 -14.93590 -14.70857 -14.50199 -14.35202 -14.07719 -13.57743 -13.46559 -13.12052 -12.82172 -12.73929 -12.46109 -12.30462 -11.64378 -11.56643 -10.69316 -9.81130 -9.51184 -8.28761 -6.42239 -0.20398 0.33426 1.33621 1.34403 1.47347 1.69625 1.96304 2.33292 2.86986 2.97042 3.03721 3.52930 3.99159 4.06813 4.11750 4.43809 4.81184 4.98347 5.14494 5.22357 5.33238 5.35909 5.55719 5.63553 5.93252 6.03966 6.52903 6.69281 7.26689 8.81577 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.031021 B = 0.011905 C = 0.009808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.411693 B = 2351.466229 C = 2854.150437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.282 3.718 3 C -0.033 4.033 4 C -0.063 4.063 5 C -0.091 4.091 6 C -0.106 4.106 7 C 0.066 3.934 8 F -0.150 7.150 9 C -0.060 4.060 10 C 0.052 3.948 11 C -0.528 4.528 12 H 0.059 0.941 13 C 0.004 3.996 14 N -0.928 5.928 15 Si 0.964 3.036 16 H -0.259 1.259 17 H -0.281 1.281 18 H -0.271 1.271 19 H 0.169 0.831 20 H 0.193 0.807 21 H 0.173 0.827 22 H 0.002 0.998 23 H 0.010 0.990 24 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.278 -12.137 5.014 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.032 4.032 3 C -0.037 4.037 4 C -0.083 4.083 5 C -0.108 4.108 6 C -0.125 4.125 7 C 0.046 3.954 8 F -0.129 7.129 9 C -0.063 4.063 10 C 0.015 3.985 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.788 3.212 16 H -0.183 1.183 17 H -0.207 1.207 18 H -0.197 1.197 19 H 0.187 0.813 20 H 0.210 0.790 21 H 0.190 0.810 22 H 0.020 0.980 23 H 0.029 0.971 24 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.450 -11.931 4.985 15.447 hybrid contribution -0.192 1.173 -1.066 1.597 sum 8.258 -10.758 3.919 14.117 Atomic orbital electron populations 1.81103 1.13440 1.09299 1.10603 1.25875 0.93110 0.92016 0.92174 1.15900 0.83570 0.96451 1.07769 1.21579 0.95312 0.95638 0.95793 1.21369 0.92515 0.98694 0.98262 1.21755 1.02580 0.90778 0.97408 1.17700 0.88568 0.85711 1.03375 1.91452 1.79363 1.53441 1.88597 1.20445 0.93533 0.96671 0.95696 1.18068 0.93758 0.90662 0.96050 1.21304 1.36658 1.05578 0.93023 0.92252 1.25944 0.95062 0.94793 1.03635 1.70087 1.39024 1.09677 1.38003 0.85411 0.77884 0.78885 0.79065 1.18318 1.20656 1.19660 0.81335 0.78953 0.81000 0.98025 0.97142 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -21.20 18.54 19.00 0.35 -20.84 14 2 C 0.28 11.60 13.80 88.33 1.22 12.82 14 3 C -0.03 -1.17 5.73 -21.37 -0.12 -1.29 14 4 C -0.06 -1.38 9.75 22.54 0.22 -1.16 14 5 C -0.09 -1.50 10.03 22.22 0.22 -1.28 14 6 C -0.11 -2.36 10.02 22.37 0.22 -2.13 14 7 C 0.07 2.31 7.23 22.34 0.16 2.48 14 8 F -0.15 -6.04 16.47 44.97 0.74 -5.30 14 9 C -0.06 -2.50 5.11 -19.55 -0.10 -2.60 14 10 C 0.05 2.81 4.52 29.10 0.13 2.94 14 11 C -0.53 -30.69 9.09 25.60 0.23 -30.46 14 12 H 0.06 3.35 7.74 -2.91 -0.02 3.33 14 13 C 0.00 0.25 5.46 84.65 0.46 0.71 14 14 N -0.93 -57.90 13.29 21.45 0.28 -57.62 14 15 Si 0.96 45.72 29.54 68.60 2.03 47.74 14 16 H -0.26 -11.70 7.11 99.48 0.71 -10.99 14 17 H -0.28 -13.15 7.11 99.48 0.71 -12.44 14 18 H -0.27 -12.35 7.11 99.48 0.71 -11.65 14 19 H 0.17 2.49 8.06 -2.91 -0.02 2.47 14 20 H 0.19 1.16 8.06 -2.91 -0.02 1.14 14 21 H 0.17 2.56 8.06 -2.91 -0.02 2.54 14 22 H 0.00 0.09 7.09 -2.39 -0.02 0.07 14 23 H 0.01 0.61 7.64 -2.39 -0.02 0.59 14 24 H 0.27 15.52 8.31 -92.71 -0.77 14.75 14 Total: -1.00 -73.47 234.85 7.28 -66.19 By element: Atomic # 1 Polarization: -11.41 SS G_CDS: 1.22 Total: -10.19 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 2.65 Total: -19.98 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: 0.64 Total: -78.46 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.74 Total: -5.30 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.47 7.28 -66.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306590198.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.756 kcal (2) G-P(sol) polarization free energy of solvation -73.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds