Wall clock time and date at job start Mon Mar 30 2020 02:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30573 * 1 3 3 Si 1.86799 * 119.99920 * 2 1 4 4 H 1.48507 * 109.46803 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47470 * 300.00381 * 3 2 1 6 6 H 1.48501 * 109.46888 * 60.00954 * 3 2 1 7 7 C 1.40394 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00634 * 179.97438 * 7 2 1 9 9 C 1.39856 * 119.99829 * 359.97438 * 7 2 1 10 10 N 1.32429 * 125.14334 * 179.97438 * 9 7 2 11 11 C 1.33996 * 108.92076 * 180.02562 * 10 9 7 12 12 C 1.41155 * 107.02543 * 0.02562 * 11 10 9 13 13 C 1.38309 * 119.81076 * 180.24051 * 12 11 10 14 14 C 1.38311 * 120.10122 * 359.53915 * 13 12 11 15 15 C 1.38653 * 120.69628 * 0.44667 * 14 13 12 16 16 C 1.38148 * 120.42058 * 359.79414 * 15 14 13 17 17 O 1.35732 * 120.23390 * 179.97438 * 16 15 14 18 18 O 1.35124 * 125.14245 * 0.02562 * 9 7 2 19 19 H 0.97008 * 119.99592 * 359.97438 * 1 2 3 20 20 H 1.07995 * 119.94920 * 180.02562 * 13 12 11 21 21 H 1.07996 * 119.65458 * 180.22122 * 14 13 12 22 22 H 1.07997 * 119.79211 * 179.77980 * 15 14 13 23 23 H 0.96696 * 114.00528 * 270.02289 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2397 1.6177 0.0000 4 1 3.6998 1.3463 -0.0006 5 1 1.8809 2.3965 -1.2124 6 1 1.8811 2.3963 1.2126 7 6 2.0077 -1.2158 -0.0005 8 1 3.0877 -1.2160 -0.0010 9 6 1.3084 -2.4270 -0.0005 10 7 1.8650 -3.6286 -0.0015 11 6 0.8975 -4.5557 -0.0017 12 6 -0.3347 -3.8671 -0.0015 13 6 -1.5203 -4.5792 0.0034 14 6 -1.4989 -5.9622 -0.0016 15 6 -0.2958 -6.6514 -0.0023 16 6 0.9033 -5.9654 -0.0022 17 8 2.0789 -6.6440 -0.0023 18 8 -0.0374 -2.5481 -0.0005 19 1 -0.4850 0.8401 0.0004 20 1 -2.4643 -4.0547 0.0032 21 1 -2.4290 -6.5110 -0.0014 22 1 -0.2961 -7.7314 -0.0026 23 1 2.4194 -6.8411 0.8810 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306707387.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:59 Heat of formation + Delta-G solvation = -53.134322 kcal Electronic energy + Delta-G solvation = -12580.103726 eV Core-core repulsion = 10165.180880 eV Total energy + Delta-G solvation = -2414.922845 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.24387 -39.46184 -37.01174 -35.81684 -34.80682 -31.16871 -30.19396 -28.12225 -23.70332 -23.53623 -22.26203 -20.05887 -19.17738 -17.91359 -17.39925 -17.06510 -16.75025 -16.16258 -15.39304 -15.03129 -14.33141 -13.61103 -13.47951 -13.16904 -13.04985 -12.71892 -12.37498 -12.06628 -12.00046 -11.58168 -11.32913 -10.74337 -9.56563 -9.10062 -9.05115 -6.98554 0.09759 0.56633 1.30604 1.35449 1.57804 1.93203 2.09784 2.45892 2.76402 3.08080 3.41851 3.76675 4.13440 4.44197 4.57485 4.69336 4.83716 5.01984 5.30446 5.45689 5.58156 5.63074 5.93182 6.01769 6.27322 6.34970 6.92769 7.55531 7.98495 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.061881 B = 0.009592 C = 0.008335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.375272 B = 2918.328255 C = 3358.337035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.025 3.975 3 Si 1.024 2.976 4 H -0.248 1.248 5 H -0.255 1.255 6 H -0.253 1.253 7 C -0.432 4.432 8 H 0.124 0.876 9 C 0.337 3.663 10 N -0.653 5.653 11 C 0.035 3.965 12 C -0.094 4.094 13 C -0.091 4.091 14 C -0.135 4.135 15 C -0.119 4.119 16 C 0.064 3.936 17 O -0.499 6.499 18 O -0.220 6.220 19 H 0.307 0.693 20 H 0.136 0.864 21 H 0.176 0.824 22 H 0.165 0.835 23 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.680 -2.734 1.699 4.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.197 4.197 3 Si 0.840 3.160 4 H -0.171 1.171 5 H -0.179 1.179 6 H -0.177 1.177 7 C -0.465 4.465 8 H 0.142 0.858 9 C 0.157 3.843 10 N -0.390 5.390 11 C -0.086 4.086 12 C -0.146 4.146 13 C -0.110 4.110 14 C -0.155 4.155 15 C -0.139 4.139 16 C 0.017 3.983 17 O -0.309 6.309 18 O -0.117 6.117 19 H 0.118 0.882 20 H 0.154 0.846 21 H 0.193 0.807 22 H 0.183 0.817 23 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.284 -2.641 1.090 3.657 hybrid contribution -0.296 0.792 0.486 0.975 sum -2.580 -1.849 1.576 3.543 Atomic orbital electron populations 1.69725 1.09750 1.32914 1.28978 1.27488 0.96019 1.05970 0.90234 0.84544 0.79038 0.72611 0.79830 1.17075 1.17871 1.17720 1.19264 0.95917 0.86360 1.44958 0.85843 1.22927 0.76690 0.94786 0.89867 1.70900 1.30982 0.97647 1.39492 1.20985 0.90229 0.96073 1.01293 1.21196 0.98051 0.83135 1.12177 1.20123 0.93561 0.94313 1.03006 1.20981 0.98991 0.91109 1.04377 1.21348 0.89928 1.01227 1.01348 1.17900 0.86999 0.84791 1.08649 1.84695 1.36849 1.75153 1.34202 1.84992 1.26358 1.22882 1.77504 0.88174 0.84569 0.80651 0.81718 0.75062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.29 11.93 21.90 0.26 -40.02 14 2 C 0.03 1.22 5.50 85.40 0.47 1.68 14 3 Si 1.02 34.84 29.56 68.60 2.03 36.87 14 4 H -0.25 -8.16 7.11 99.48 0.71 -7.45 14 5 H -0.25 -8.13 7.11 99.48 0.71 -7.42 14 6 H -0.25 -8.02 7.11 99.48 0.71 -7.32 14 7 C -0.43 -23.76 9.45 23.19 0.22 -23.54 14 8 H 0.12 6.42 7.85 -2.91 -0.02 6.40 14 9 C 0.34 20.47 7.60 84.99 0.65 21.12 14 10 N -0.65 -39.49 11.34 -301.71 -3.42 -42.92 14 11 C 0.03 1.91 7.18 40.20 0.29 2.20 14 12 C -0.09 -5.02 7.42 23.00 0.17 -4.85 14 13 C -0.09 -3.77 10.05 22.30 0.22 -3.55 14 14 C -0.14 -4.42 10.03 22.39 0.22 -4.19 14 15 C -0.12 -4.11 9.96 22.35 0.22 -3.89 14 16 C 0.06 2.86 6.77 22.92 0.16 3.01 14 17 O -0.50 -20.20 13.51 -90.55 -1.22 -21.43 14 18 O -0.22 -13.24 9.01 -19.89 -0.18 -13.42 14 19 H 0.31 13.50 8.29 -92.70 -0.77 12.73 14 20 H 0.14 4.93 8.06 -2.91 -0.02 4.90 14 21 H 0.18 3.88 8.06 -2.91 -0.02 3.85 14 22 H 0.17 4.21 8.06 -2.91 -0.02 4.18 14 23 H 0.39 11.99 9.06 -74.06 -0.67 11.32 14 Total: -1.00 -72.40 220.00 0.67 -71.73 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.59 Total: 21.20 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 2.62 Total: -12.01 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -3.16 Total: -82.94 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.40 Total: -34.85 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Total: -72.40 0.67 -71.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306707387.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.591 kcal (2) G-P(sol) polarization free energy of solvation -72.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds