Wall clock time and date at job start Mon Mar 30 2020 02:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39624 * 120.13799 * 272.50832 * 3 2 1 5 5 C 1.38157 * 119.81951 * 179.97438 * 4 3 2 6 6 F 1.35098 * 119.95079 * 180.02562 * 5 4 3 7 7 C 1.38599 * 120.09827 * 0.03027 * 5 4 3 8 8 C 1.38303 * 120.28095 * 359.69219 * 7 5 4 9 9 C 1.37983 * 120.17844 * 0.55957 * 8 7 5 10 10 C 1.50699 * 120.05184 * 179.74481 * 9 8 7 11 11 C 1.50706 * 109.46817 * 264.72388 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.72198 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99350 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47353 * 89.99430 * 15 13 11 17 17 H 1.48494 * 109.47031 * 209.99977 * 15 13 11 18 18 H 1.48504 * 109.46680 * 329.99678 * 15 13 11 19 19 H 1.08001 * 120.08687 * 359.95940 * 4 3 2 20 20 H 1.08000 * 119.86112 * 180.02562 * 7 5 4 21 21 H 1.07997 * 119.91649 * 180.30362 * 8 7 5 22 22 H 1.09000 * 109.47247 * 144.72452 * 10 9 8 23 23 H 1.09001 * 109.47358 * 24.71878 * 10 9 8 24 24 H 0.97005 * 119.99656 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.0519 1.2063 5 6 4.6506 -0.0515 1.1986 6 9 5.3316 -0.1028 2.3643 7 6 5.3389 0.0016 -0.0032 8 6 4.6487 0.0479 -1.2007 9 6 3.2689 0.0533 -1.2063 10 6 2.5197 0.1097 -2.5126 11 6 2.1619 1.5399 -2.8251 12 1 2.4444 2.3285 -2.1435 13 6 1.4692 1.8409 -3.9787 14 7 1.1565 3.0889 -4.2511 15 14 0.9737 0.4760 -5.1538 16 1 -0.3679 -0.0379 -4.7781 17 1 0.9300 1.0076 -6.5396 18 1 1.9654 -0.6268 -5.0777 19 1 2.7327 -0.0925 2.1429 20 1 6.4189 0.0013 -0.0047 21 1 5.1910 0.0842 -2.1339 22 1 1.6089 -0.4841 -2.4351 23 1 3.1474 -0.2901 -3.3091 24 1 0.6689 3.3007 -5.0625 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307020350.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:32 Heat of formation + Delta-G solvation = -18.865934 kcal Electronic energy + Delta-G solvation = -12138.858116 eV Core-core repulsion = 9737.794049 eV Total energy + Delta-G solvation = -2401.064067 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.80504 -40.43225 -37.37073 -35.39374 -33.24177 -32.39807 -29.31969 -25.39023 -24.62759 -22.36097 -20.03867 -19.01960 -17.59143 -17.09848 -16.75577 -16.52917 -15.97251 -14.98256 -14.84370 -14.80944 -14.49466 -14.17649 -13.83906 -13.54648 -13.40363 -12.90534 -12.52440 -12.12163 -12.02052 -11.85121 -11.59853 -10.82088 -10.03304 -9.43661 -8.32352 -6.37293 -0.25422 0.24788 1.33683 1.35497 1.44934 1.66778 1.92162 2.31814 2.74934 2.88742 3.03111 3.42989 3.88238 3.97697 4.07024 4.33485 4.67709 4.89709 5.02554 5.04006 5.12565 5.24729 5.51570 5.64348 5.86677 6.20129 6.49164 6.69627 7.26343 8.83630 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.041719 B = 0.009646 C = 0.008718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.994095 B = 2902.181754 C = 3210.845979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.282 3.718 3 C -0.026 4.026 4 C -0.098 4.098 5 C 0.077 3.923 6 F -0.137 7.137 7 C -0.101 4.101 8 C -0.092 4.092 9 C -0.016 4.016 10 C 0.011 3.989 11 C -0.515 4.515 12 H 0.037 0.963 13 C 0.012 3.988 14 N -0.945 5.945 15 Si 0.935 3.065 16 H -0.283 1.283 17 H -0.280 1.280 18 H -0.230 1.230 19 H 0.158 0.842 20 H 0.175 0.825 21 H 0.161 0.839 22 H 0.017 0.983 23 H 0.058 0.942 24 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.521 -9.250 7.602 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.032 4.032 3 C -0.030 4.030 4 C -0.119 4.119 5 C 0.058 3.942 6 F -0.116 7.116 7 C -0.120 4.120 8 C -0.110 4.110 9 C -0.019 4.019 10 C -0.027 4.027 11 C -0.553 4.553 12 H 0.055 0.945 13 C -0.186 4.186 14 N -0.585 5.585 15 Si 0.759 3.241 16 H -0.209 1.209 17 H -0.205 1.205 18 H -0.153 1.153 19 H 0.176 0.824 20 H 0.193 0.807 21 H 0.178 0.822 22 H 0.035 0.965 23 H 0.076 0.924 24 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.707 -9.146 7.528 14.701 hybrid contribution -0.364 0.133 -0.493 0.628 sum 8.342 -9.013 7.034 14.153 Atomic orbital electron populations 1.81117 1.13396 1.10441 1.09123 1.25793 0.93015 0.92430 0.92000 1.15712 0.83623 1.09170 0.94485 1.21085 0.93047 1.00071 0.97675 1.17321 0.89115 1.05745 0.82045 1.91507 1.79583 1.94185 1.46277 1.21640 1.02639 0.97988 0.89756 1.21090 0.91664 0.98638 0.99620 1.20293 0.95079 0.92753 0.93773 1.18802 0.95687 0.95873 0.92294 1.21057 1.35949 0.92065 1.06237 0.94476 1.25882 0.95281 0.97670 0.99776 1.70037 1.41255 1.20138 1.27083 0.85876 0.79571 0.80508 0.78167 1.20929 1.20540 1.15254 0.82414 0.80742 0.82177 0.96492 0.92422 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.52 18.54 19.00 0.35 -20.17 14 2 C 0.28 11.24 13.89 88.33 1.23 12.46 14 3 C -0.03 -0.89 5.73 -21.37 -0.12 -1.01 14 4 C -0.10 -2.57 9.74 22.59 0.22 -2.35 14 5 C 0.08 1.81 7.29 22.34 0.16 1.97 14 6 F -0.14 -3.08 17.26 44.97 0.78 -2.31 14 7 C -0.10 -2.15 10.02 22.37 0.22 -1.93 14 8 C -0.09 -2.45 9.66 22.22 0.21 -2.24 14 9 C -0.02 -0.57 5.10 -19.59 -0.10 -0.67 14 10 C 0.01 0.46 3.69 29.10 0.11 0.56 14 11 C -0.52 -28.16 9.65 25.60 0.25 -27.91 14 12 H 0.04 2.26 7.98 -2.91 -0.02 2.23 14 13 C 0.01 0.66 5.47 84.66 0.46 1.12 14 14 N -0.94 -58.47 13.96 21.45 0.30 -58.17 14 15 Si 0.94 43.05 27.47 68.60 1.88 44.93 14 16 H -0.28 -13.33 7.11 99.48 0.71 -12.62 14 17 H -0.28 -12.59 7.11 99.48 0.71 -11.89 14 18 H -0.23 -9.27 6.54 99.48 0.65 -8.62 14 19 H 0.16 3.43 8.06 -2.91 -0.02 3.41 14 20 H 0.18 2.43 8.06 -2.91 -0.02 2.40 14 21 H 0.16 3.64 8.06 -2.91 -0.02 3.62 14 22 H 0.02 0.76 6.71 -2.39 -0.02 0.74 14 23 H 0.06 2.27 7.11 -2.39 -0.02 2.26 14 24 H 0.27 15.48 8.31 -92.70 -0.77 14.71 14 Total: -1.00 -66.58 232.49 7.12 -59.46 By element: Atomic # 1 Polarization: -4.93 SS G_CDS: 1.17 Total: -3.76 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 2.64 Total: -19.98 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: 0.65 Total: -78.35 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.93 kcal Total: -66.58 7.12 -59.46 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307020350.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.592 kcal (2) G-P(sol) polarization free energy of solvation -66.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds