Wall clock time and date at job start Mon Mar 30 2020 02:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39703 * 120.12785 * 333.69710 * 3 2 1 5 5 C 1.37833 * 119.87057 * 179.97438 * 4 3 2 6 6 C 1.38654 * 120.12824 * 0.02562 * 5 4 3 7 7 F 1.35101 * 119.87707 * 179.97438 * 6 5 4 8 8 C 1.38619 * 120.25084 * 359.72462 * 6 5 4 9 9 C 1.37876 * 120.12391 * 0.54913 * 8 6 5 10 10 C 1.50698 * 120.06101 * 179.72339 * 9 8 6 11 11 C 1.50706 * 109.47294 * 264.72599 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 H 1.07999 * 120.06229 * 0.02562 * 4 3 2 20 20 H 1.07994 * 119.93203 * 180.02562 * 5 4 3 21 21 H 1.07997 * 119.94127 * 180.27959 * 8 6 5 22 22 H 1.09001 * 109.46665 * 144.72980 * 10 9 8 23 23 H 1.09000 * 109.47722 * 24.73312 * 10 9 8 24 24 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -1.0822 0.5354 5 6 4.6480 -1.0763 0.5322 6 6 5.3381 0.0018 -0.0006 7 9 6.6891 0.0026 -0.0006 8 6 4.6471 1.0767 -0.5379 9 6 3.2684 1.0842 -0.5349 10 6 2.5186 2.2563 -1.1138 11 6 2.1615 3.2187 -0.0104 12 1 2.4491 3.0032 1.0081 13 6 1.4676 4.3740 -0.3011 14 7 1.1169 4.6361 -1.5413 15 14 1.0256 5.5673 1.0665 16 1 1.5302 5.0447 2.3616 17 1 1.6448 6.8884 0.7902 18 1 -0.4503 5.7170 1.1349 19 1 2.7332 -1.9227 0.9503 20 1 5.1915 -1.9131 0.9455 21 1 5.1897 1.9119 -0.9556 22 1 1.6075 1.9023 -1.5961 23 1 3.1456 2.7619 -1.8482 24 1 0.6291 5.4492 -1.7459 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307334518.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:27 Heat of formation + Delta-G solvation = -6.611537 kcal Electronic energy + Delta-G solvation = -12134.492604 eV Core-core repulsion = 9733.959927 eV Total energy + Delta-G solvation = -2400.532676 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.70719 -39.04013 -35.67556 -33.64059 -31.56938 -30.53169 -27.49941 -23.80238 -23.18219 -21.07541 -18.38333 -16.89468 -16.42037 -16.22244 -15.36348 -14.63311 -14.12384 -13.50642 -13.40552 -13.35800 -12.71506 -12.35671 -11.97451 -11.86527 -11.52128 -11.29485 -11.05836 -10.69423 -10.60692 -9.80786 -9.63595 -8.57446 -8.53658 -8.20723 -6.15991 -4.21260 1.04759 1.58892 3.24975 3.31190 3.33633 3.35597 3.38244 4.24216 4.39084 4.43114 4.50006 5.05732 5.09566 5.21944 5.48900 5.69856 6.09808 6.20046 6.32773 6.53018 6.64719 7.10464 7.32635 7.46061 7.78074 8.09693 8.15643 8.82638 9.44099 10.94160 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.032121 B = 0.010324 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.498516 B = 2711.496045 C = 3202.092093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.272 3.728 3 C -0.050 4.050 4 C -0.045 4.045 5 C -0.184 4.184 6 C 0.122 3.878 7 F -0.142 7.142 8 C -0.160 4.160 9 C 0.041 3.959 10 C 0.040 3.960 11 C -0.518 4.518 12 H 0.061 0.939 13 C 0.063 3.937 14 N -0.888 5.888 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.282 1.282 19 H 0.134 0.866 20 H 0.136 0.864 21 H 0.142 0.858 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 -9.024 2.770 12.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.043 4.043 3 C -0.053 4.053 4 C -0.066 4.066 5 C -0.203 4.203 6 C 0.102 3.898 7 F -0.121 7.121 8 C -0.179 4.179 9 C 0.039 3.961 10 C 0.003 3.997 11 C -0.556 4.556 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.526 5.526 15 Si 0.724 3.276 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.208 1.208 19 H 0.152 0.848 20 H 0.153 0.847 21 H 0.160 0.840 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.879 -8.892 2.658 10.986 hybrid contribution 0.438 0.814 0.693 1.156 sum 6.317 -8.078 3.351 10.789 Atomic orbital electron populations 1.81113 1.12162 1.08414 1.08528 1.25309 0.92408 0.92939 0.93628 1.16024 0.85073 0.97163 1.07048 1.20879 0.93080 0.96665 0.95963 1.20778 0.94266 0.99182 1.06041 1.17980 0.76502 0.95948 0.99352 1.91477 1.29406 1.96746 1.94433 1.21046 0.94202 0.98571 1.04079 1.20689 0.92554 0.93675 0.89211 1.18555 0.95277 0.89105 0.96779 1.20949 1.36778 1.04406 0.93453 0.92120 1.24980 0.95345 0.97932 0.95709 1.69953 1.38714 1.25999 1.17968 0.86448 0.78309 0.80754 0.82093 1.19512 1.20727 1.20848 0.84777 0.84651 0.83989 0.94568 0.94116 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.35 18.54 41.84 0.78 -8.57 14 2 C 0.27 5.46 13.89 -22.47 -0.31 5.15 14 3 C -0.05 -0.88 5.73 -106.89 -0.61 -1.49 14 4 C -0.05 -0.61 9.75 -39.18 -0.38 -1.00 14 5 C -0.18 -2.35 10.01 -39.58 -0.40 -2.74 14 6 C 0.12 1.80 7.31 -39.29 -0.29 1.52 14 7 F -0.14 -2.05 17.26 2.25 0.04 -2.01 14 8 C -0.16 -2.71 9.64 -39.57 -0.38 -3.09 14 9 C 0.04 0.81 5.10 -104.22 -0.53 0.27 14 10 C 0.04 0.95 4.62 -29.03 -0.13 0.82 14 11 C -0.52 -13.89 9.09 -34.44 -0.31 -14.21 14 12 H 0.06 1.61 7.74 -52.49 -0.41 1.21 14 13 C 0.06 1.74 5.46 -17.82 -0.10 1.65 14 14 N -0.89 -25.73 13.29 55.43 0.74 -25.00 14 15 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 14 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 14 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 14 19 H 0.13 1.42 8.06 -52.49 -0.42 1.00 14 20 H 0.14 1.32 8.06 -52.49 -0.42 0.90 14 21 H 0.14 2.30 8.06 -52.49 -0.42 1.88 14 22 H 0.04 0.95 7.28 -51.93 -0.38 0.57 14 23 H 0.04 1.00 8.05 -51.93 -0.42 0.59 14 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 14 LS Contribution 236.10 15.07 3.56 3.56 Total: -1.00 -29.26 236.10 -4.97 -34.23 By element: Atomic # 1 Polarization: -3.84 SS G_CDS: -1.61 Total: -5.44 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -3.45 Total: -13.12 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 1.51 Total: -33.57 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.26 -4.97 -34.23 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307334518.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.617 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds