Wall clock time and date at job start Mon Mar 30 2020 02:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39703 * 120.12785 * 333.69710 * 3 2 1 5 5 C 1.37833 * 119.87057 * 179.97438 * 4 3 2 6 6 C 1.38654 * 120.12824 * 0.02562 * 5 4 3 7 7 F 1.35101 * 119.87707 * 179.97438 * 6 5 4 8 8 C 1.38619 * 120.25084 * 359.72462 * 6 5 4 9 9 C 1.37876 * 120.12391 * 0.54913 * 8 6 5 10 10 C 1.50698 * 120.06101 * 179.72339 * 9 8 6 11 11 C 1.50706 * 109.47294 * 264.72599 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 H 1.07999 * 120.06229 * 0.02562 * 4 3 2 20 20 H 1.07994 * 119.93203 * 180.02562 * 5 4 3 21 21 H 1.07997 * 119.94127 * 180.27959 * 8 6 5 22 22 H 1.09001 * 109.46665 * 144.72980 * 10 9 8 23 23 H 1.09000 * 109.47722 * 24.73312 * 10 9 8 24 24 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -1.0822 0.5354 5 6 4.6480 -1.0763 0.5322 6 6 5.3381 0.0018 -0.0006 7 9 6.6891 0.0026 -0.0006 8 6 4.6471 1.0767 -0.5379 9 6 3.2684 1.0842 -0.5349 10 6 2.5186 2.2563 -1.1138 11 6 2.1615 3.2187 -0.0104 12 1 2.4491 3.0032 1.0081 13 6 1.4676 4.3740 -0.3011 14 7 1.1169 4.6361 -1.5413 15 14 1.0256 5.5673 1.0665 16 1 1.5302 5.0447 2.3616 17 1 1.6448 6.8884 0.7902 18 1 -0.4503 5.7170 1.1349 19 1 2.7332 -1.9227 0.9503 20 1 5.1915 -1.9131 0.9455 21 1 5.1897 1.9119 -0.9556 22 1 1.6075 1.9023 -1.5961 23 1 3.1456 2.7619 -1.8482 24 1 0.6291 5.4492 -1.7459 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307334518.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:27 Heat of formation + Delta-G solvation = -23.116769 kcal Electronic energy + Delta-G solvation = -12135.208324 eV Core-core repulsion = 9733.959927 eV Total energy + Delta-G solvation = -2401.248397 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.87695 -40.38021 -37.25374 -35.52642 -33.23095 -31.84122 -29.25092 -25.61627 -24.47465 -22.58380 -19.72916 -18.60899 -18.06430 -17.50431 -16.56210 -16.52657 -15.44581 -14.99407 -14.82505 -14.62064 -14.45134 -14.16955 -13.55651 -13.39860 -13.16682 -12.95304 -12.65341 -12.54644 -12.30309 -11.58429 -11.50340 -10.66083 -9.87222 -9.56781 -8.26627 -6.38513 -0.25686 0.35846 1.35532 1.37462 1.49104 1.77966 1.93657 2.35513 2.88372 3.04880 3.07107 3.25447 3.86751 3.92740 4.24632 4.45224 4.86970 4.94483 5.05028 5.13570 5.26299 5.28616 5.66166 5.71529 5.86941 6.06289 6.60445 6.73846 7.30541 8.83611 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.032121 B = 0.010324 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.498516 B = 2711.496045 C = 3202.092093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.285 3.715 3 C -0.067 4.067 4 C -0.022 4.022 5 C -0.156 4.156 6 C 0.131 3.869 7 F -0.136 7.136 8 C -0.168 4.168 9 C 0.016 3.984 10 C 0.047 3.953 11 C -0.526 4.526 12 H 0.060 0.940 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.958 3.042 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.285 1.285 19 H 0.175 0.825 20 H 0.182 0.818 21 H 0.138 0.862 22 H 0.003 0.997 23 H 0.022 0.978 24 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.315 -10.737 4.577 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.029 4.029 3 C -0.070 4.070 4 C -0.042 4.042 5 C -0.175 4.175 6 C 0.111 3.889 7 F -0.114 7.114 8 C -0.186 4.186 9 C 0.014 3.986 10 C 0.011 3.989 11 C -0.564 4.564 12 H 0.079 0.921 13 C -0.192 4.192 14 N -0.566 5.566 15 Si 0.783 3.217 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.211 1.211 19 H 0.192 0.808 20 H 0.200 0.800 21 H 0.156 0.844 22 H 0.021 0.979 23 H 0.040 0.960 24 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.525 -10.614 4.470 13.757 hybrid contribution 0.050 1.255 0.118 1.262 sum 7.575 -9.358 4.588 12.884 Atomic orbital electron populations 1.81104 1.13519 1.09895 1.10351 1.25825 0.93029 0.91708 0.92348 1.16180 0.83782 0.98406 1.08653 1.21263 0.93448 0.95838 0.93683 1.21254 0.93800 0.99120 1.03287 1.17992 0.76698 0.95655 0.98567 1.91503 1.28990 1.96678 1.94272 1.20943 0.93189 0.99738 1.04778 1.20172 0.93397 0.93180 0.91884 1.18237 0.94160 0.90701 0.95851 1.21315 1.36050 1.04907 0.94114 0.92139 1.25856 0.95517 0.99915 0.97862 1.70071 1.39878 1.26719 1.19928 0.85490 0.77718 0.78895 0.79618 1.18484 1.19689 1.21097 0.80783 0.80029 0.84370 0.97865 0.96004 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -21.04 18.54 19.00 0.35 -20.69 14 2 C 0.28 11.42 13.89 88.33 1.23 12.65 14 3 C -0.07 -2.26 5.73 -21.33 -0.12 -2.38 14 4 C -0.02 -0.50 9.75 22.53 0.22 -0.28 14 5 C -0.16 -3.12 10.01 22.27 0.22 -2.90 14 6 C 0.13 3.39 7.31 22.46 0.16 3.56 14 7 F -0.14 -3.41 17.26 44.97 0.78 -2.63 14 8 C -0.17 -5.48 9.64 22.28 0.21 -5.26 14 9 C 0.02 0.64 5.10 -19.60 -0.10 0.54 14 10 C 0.05 2.39 4.62 29.10 0.13 2.52 14 11 C -0.53 -28.92 9.09 25.60 0.23 -28.68 14 12 H 0.06 3.24 7.74 -2.91 -0.02 3.22 14 13 C 0.01 0.41 5.46 84.65 0.46 0.87 14 14 N -0.93 -55.48 13.29 21.45 0.28 -55.19 14 15 Si 0.96 44.31 29.54 68.60 2.03 46.34 14 16 H -0.26 -11.54 7.11 99.48 0.71 -10.83 14 17 H -0.27 -12.04 7.11 99.48 0.71 -11.34 14 18 H -0.28 -13.20 7.11 99.48 0.71 -12.49 14 19 H 0.17 2.64 8.06 -2.91 -0.02 2.62 14 20 H 0.18 2.13 8.06 -2.91 -0.02 2.10 14 21 H 0.14 4.50 8.06 -2.91 -0.02 4.48 14 22 H 0.00 0.18 7.28 -2.39 -0.02 0.16 14 23 H 0.02 1.14 8.05 -2.39 -0.02 1.12 14 24 H 0.27 14.97 8.31 -92.71 -0.77 14.20 14 Total: -1.00 -65.61 236.10 7.32 -58.30 By element: Atomic # 1 Polarization: -7.98 SS G_CDS: 1.22 Total: -6.76 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 2.66 Total: -19.37 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: 0.64 Total: -75.88 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -65.61 7.32 -58.30 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307334518.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.181 kcal (2) G-P(sol) polarization free energy of solvation -65.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds