Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.46181 * 134.57616 * 85.00546 * 11 10 9 13 13 C 1.52735 * 90.93658 * 216.39215 * 12 11 10 14 14 S 1.65387 * 134.58109 * 264.64021 * 11 10 9 15 15 O 1.42097 * 109.01843 * 259.90548 * 14 11 10 16 16 O 1.42109 * 109.00952 * 37.99220 * 14 11 10 17 17 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 19 19 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 20 20 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 21 21 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 22 22 H 1.09012 * 112.99727 * 331.94945 * 12 11 10 23 23 H 1.08993 * 113.00307 * 100.95577 * 12 11 10 24 24 H 1.08995 * 114.28805 * 80.48092 * 13 12 11 25 25 H 1.08995 * 114.29110 * 213.41049 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 0.9209 -5.7741 -1.0350 13 6 -0.2433 -6.1330 -0.1137 14 16 1.0282 -5.9910 1.1752 15 8 1.9356 -7.0838 1.2152 16 8 0.6170 -5.2574 2.3207 17 1 -0.4850 0.8400 -0.0004 18 1 0.6241 -2.5575 -0.8880 19 1 0.6247 -2.5564 0.8919 20 1 2.8714 -3.6047 -0.8890 21 1 2.8726 -3.6039 0.8910 22 1 0.6096 -5.2115 -1.9153 23 1 1.5404 -6.6339 -1.2898 24 1 -1.0248 -5.3750 -0.0628 25 1 -0.6290 -7.1431 -0.2512 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307373072.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = -34.256240 kcal Electronic energy + Delta-G solvation = -11675.752106 eV Core-core repulsion = 9397.091827 eV Total energy + Delta-G solvation = -2278.660279 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.77317 -36.87766 -35.59010 -33.53210 -31.36448 -27.96078 -24.44999 -22.74992 -21.02435 -18.46128 -17.01100 -16.67557 -16.06949 -15.80397 -14.72475 -14.42672 -13.72217 -13.23850 -12.86183 -12.24945 -11.94334 -11.86805 -11.81924 -11.46246 -11.21364 -10.90403 -10.66370 -10.34459 -9.92749 -9.78868 -9.16013 -8.36056 -8.28415 -6.01464 -4.04694 0.61224 2.47352 3.31114 3.38615 3.42448 3.86788 4.26094 4.46237 4.62131 4.88207 5.14558 5.34996 5.47136 5.79385 5.93335 6.41827 6.45405 6.86752 7.12692 7.69527 7.81649 8.01968 8.37634 9.02992 9.59419 11.10027 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.067313 B = 0.008201 C = 0.008155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.864281 B = 3413.201403 C = 3432.755629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.005 3.995 10 C 0.167 3.833 11 N -0.990 5.990 12 C 0.081 3.919 13 C -0.593 4.593 14 S 2.570 3.430 15 O -0.956 6.956 16 O -0.945 6.945 17 H 0.260 0.740 18 H 0.020 0.980 19 H 0.026 0.974 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.112 0.888 23 H 0.093 0.907 24 H 0.151 0.849 25 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 -11.917 -1.648 12.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.034 4.034 10 C 0.045 3.955 11 N -0.833 5.833 12 C -0.047 4.047 13 C -0.723 4.723 14 S 2.665 3.335 15 O -0.946 6.946 16 O -0.935 6.935 17 H 0.070 0.930 18 H 0.038 0.962 19 H 0.044 0.956 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.130 0.870 23 H 0.111 0.889 24 H 0.169 0.831 25 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.187 -12.011 -0.539 12.025 hybrid contribution 0.082 1.165 -0.982 1.526 sum 0.269 -10.846 -1.521 10.955 Atomic orbital electron populations 1.69979 1.06096 1.26560 1.50517 1.25005 0.94847 0.99297 0.95173 0.86509 0.80075 0.83658 0.77564 1.19696 1.21052 1.20969 1.21183 0.93120 0.90859 1.51130 0.92439 1.19500 0.94769 0.90942 0.98164 1.21280 0.93882 0.79818 1.00496 1.58254 1.72702 1.31956 1.20355 1.22159 0.90150 0.94833 0.97534 1.31184 1.12625 1.09712 1.18827 1.06773 0.78047 0.74657 0.74072 1.93687 1.58388 1.54265 1.88229 1.93625 1.80845 1.68616 1.50391 0.93000 0.96206 0.95595 0.92186 0.91815 0.86986 0.88909 0.83077 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.10 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.00 0.12 5.30 -27.88 -0.15 -0.02 15 10 C 0.17 3.40 6.89 -4.04 -0.03 3.37 15 11 N -0.99 -16.71 3.59 -158.64 -0.57 -17.28 15 12 C 0.08 1.03 8.08 -4.35 -0.04 0.99 15 13 C -0.59 -6.66 8.72 37.02 0.32 -6.34 15 14 S 2.57 38.54 7.74 -107.50 -0.83 37.70 15 15 O -0.96 -15.69 17.86 -57.02 -1.02 -16.71 15 16 O -0.94 -18.25 18.18 -57.02 -1.04 -19.29 15 17 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 18 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 19 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 21 H 0.06 1.27 8.14 -51.93 -0.42 0.84 15 22 H 0.11 1.38 8.14 -51.92 -0.42 0.96 15 23 H 0.09 0.97 7.94 -51.93 -0.41 0.56 15 24 H 0.15 1.80 8.14 -51.93 -0.42 1.38 15 25 H 0.12 0.94 8.14 -51.93 -0.42 0.52 15 LS Contribution 236.05 15.07 3.56 3.56 Total: -1.00 -34.83 236.05 -7.40 -42.22 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -2.91 Total: -5.22 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -0.30 Total: -15.43 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.17 Total: -43.38 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -2.05 Total: -36.00 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 38.54 SS G_CDS: -0.83 Total: 37.70 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -34.83 -7.40 -42.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307373072.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.965 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds