Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.46181 * 134.57616 * 85.00546 * 11 10 9 13 13 C 1.52735 * 90.93658 * 216.39215 * 12 11 10 14 14 S 1.65387 * 134.58109 * 264.64021 * 11 10 9 15 15 O 1.42097 * 109.01843 * 259.90548 * 14 11 10 16 16 O 1.42109 * 109.00952 * 37.99220 * 14 11 10 17 17 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 19 19 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 20 20 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 21 21 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 22 22 H 1.09012 * 112.99727 * 331.94945 * 12 11 10 23 23 H 1.08993 * 113.00307 * 100.95577 * 12 11 10 24 24 H 1.08995 * 114.28805 * 80.48092 * 13 12 11 25 25 H 1.08995 * 114.29110 * 213.41049 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 0.9209 -5.7741 -1.0350 13 6 -0.2433 -6.1330 -0.1137 14 16 1.0282 -5.9910 1.1752 15 8 1.9356 -7.0838 1.2152 16 8 0.6170 -5.2574 2.3207 17 1 -0.4850 0.8400 -0.0004 18 1 0.6241 -2.5575 -0.8880 19 1 0.6247 -2.5564 0.8919 20 1 2.8714 -3.6047 -0.8890 21 1 2.8726 -3.6039 0.8910 22 1 0.6096 -5.2115 -1.9153 23 1 1.5404 -6.6339 -1.2898 24 1 -1.0248 -5.3750 -0.0628 25 1 -0.6290 -7.1431 -0.2512 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307373072.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = -62.021464 kcal Electronic energy + Delta-G solvation = -11676.956097 eV Core-core repulsion = 9397.091827 eV Total energy + Delta-G solvation = -2279.864269 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.00097 -38.16974 -36.90488 -35.50994 -33.14519 -29.59120 -26.26182 -23.86760 -22.83842 -19.73638 -18.66919 -18.04326 -17.67772 -17.08791 -16.46654 -15.94303 -15.07261 -14.71425 -14.37055 -13.91635 -13.49458 -13.25733 -13.15910 -13.10912 -12.73524 -12.60039 -12.37869 -11.87728 -11.56917 -11.44469 -11.22514 -10.54109 -9.71485 -8.18971 -6.30349 -0.55529 1.25889 1.41884 1.43126 1.55901 2.42441 2.69898 3.15048 3.20046 3.50265 3.73410 4.18059 4.56879 4.66793 4.73817 4.94851 4.99621 5.06366 5.47810 5.64685 5.76908 5.97613 6.27388 6.88246 7.38978 8.93390 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.067313 B = 0.008201 C = 0.008155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.864281 B = 3413.201403 C = 3432.755629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.012 3.988 10 C 0.178 3.822 11 N -1.010 6.010 12 C 0.074 3.926 13 C -0.546 4.546 14 S 2.570 3.430 15 O -0.971 6.971 16 O -0.998 6.998 17 H 0.263 0.737 18 H 0.002 0.998 19 H -0.011 1.011 20 H 0.074 0.926 21 H 0.061 0.939 22 H 0.118 0.882 23 H 0.125 0.875 24 H 0.148 0.852 25 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.250 -12.618 -2.821 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.027 4.027 10 C 0.054 3.946 11 N -0.852 5.852 12 C -0.053 4.053 13 C -0.680 4.680 14 S 2.669 3.331 15 O -0.961 6.961 16 O -0.988 6.988 17 H 0.072 0.928 18 H 0.020 0.980 19 H 0.007 0.993 20 H 0.092 0.908 21 H 0.080 0.920 22 H 0.137 0.863 23 H 0.142 0.858 24 H 0.166 0.834 25 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.612 -12.736 -1.693 12.863 hybrid contribution -0.109 1.298 -0.668 1.464 sum 0.503 -11.438 -2.361 11.690 Atomic orbital electron populations 1.70111 1.07887 1.27704 1.51607 1.25984 0.95759 1.03438 0.94680 0.85367 0.79163 0.78635 0.77646 1.18338 1.20247 1.20771 1.21689 0.93869 0.92155 1.50679 0.91541 1.19370 0.95097 0.92858 0.95389 1.20831 0.92707 0.79881 1.01134 1.58326 1.72826 1.31194 1.22817 1.22581 0.90613 0.95057 0.97020 1.30912 1.10890 1.12694 1.13544 1.06810 0.78857 0.73673 0.73759 1.93657 1.60061 1.53915 1.88433 1.93557 1.81914 1.70057 1.53319 0.92801 0.98007 0.99266 0.90790 0.92018 0.86345 0.85755 0.83382 0.80612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 15 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 15 3 Si 0.97 44.23 29.54 68.60 2.03 46.26 15 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 7 C -0.55 -30.85 9.11 25.60 0.23 -30.62 15 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 15 9 C 0.01 0.61 5.30 29.85 0.16 0.77 15 10 C 0.18 7.24 6.89 86.38 0.60 7.83 15 11 N -1.01 -33.05 3.59 -655.81 -2.35 -35.40 15 12 C 0.07 1.64 8.08 86.35 0.70 2.33 15 13 C -0.55 -10.40 8.72 71.89 0.63 -9.77 15 14 S 2.57 74.78 7.74 -56.49 -0.44 74.35 15 15 O -0.97 -30.51 17.86 -128.14 -2.29 -32.80 15 16 O -1.00 -39.57 18.18 -128.14 -2.33 -41.90 15 17 H 0.26 15.07 8.31 -92.71 -0.77 14.30 15 18 H 0.00 0.08 8.14 -2.39 -0.02 0.06 15 19 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 15 20 H 0.07 2.76 8.14 -2.39 -0.02 2.74 15 21 H 0.06 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.12 2.57 8.14 -2.38 -0.02 2.55 15 23 H 0.12 2.07 7.94 -2.39 -0.02 2.05 15 24 H 0.15 3.14 8.14 -2.39 -0.02 3.12 15 25 H 0.18 1.65 8.14 -2.39 -0.02 1.63 15 Total: -1.00 -76.49 236.05 -1.15 -77.64 By element: Atomic # 1 Polarization: -3.48 SS G_CDS: 1.17 Total: -2.31 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 2.77 Total: -29.04 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -2.07 Total: -92.20 kcal Atomic # 8 Polarization: -70.08 SS G_CDS: -4.62 Total: -74.70 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 74.78 SS G_CDS: -0.44 Total: 74.35 kcal Total: -76.49 -1.15 -77.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307373072.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.620 kcal (2) G-P(sol) polarization free energy of solvation -76.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds