Wall clock time and date at job start Mon Mar 30 2020 02:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30452 * 1 3 3 Si 1.86799 * 120.00254 * 2 1 4 4 H 1.48500 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47018 * 299.99560 * 3 2 1 6 6 H 1.48493 * 109.47255 * 59.99724 * 3 2 1 7 7 C 1.40576 * 119.99399 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99795 * 193.81365 * 7 2 1 9 9 C 1.40250 * 120.00227 * 13.82403 * 7 2 1 10 10 C 1.39405 * 120.36198 * 204.58976 * 9 7 2 11 11 C 1.40834 * 119.20342 * 180.34050 * 10 9 7 12 12 O 1.21821 * 119.95523 * 179.61978 * 11 10 9 13 13 N 1.34574 * 120.08920 * 359.60446 * 11 10 9 14 14 C 1.37579 * 131.96962 * 180.02562 * 13 11 10 15 15 C 1.34546 * 106.91938 * 179.97438 * 14 13 11 16 16 N 1.34198 * 108.46399 * 359.97438 * 15 14 13 17 17 C 1.31505 * 109.39123 * 0.02562 * 16 15 14 18 18 N 1.37983 * 131.42496 * 179.97438 * 17 16 15 19 19 H 0.96993 * 119.97247 * 0.02562 * 18 17 16 20 20 H 0.97004 * 119.99266 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.39738 * 359.96357 * 10 9 7 22 22 H 1.08003 * 126.54513 * 359.95693 * 14 13 11 23 23 H 1.07998 * 125.77075 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3045 0.0000 0.0000 3 14 2.2386 1.6177 0.0000 4 1 3.6986 1.3463 0.0006 5 1 1.8799 2.3963 -1.2125 6 1 1.8799 2.3964 1.2124 7 6 2.0073 -1.2175 0.0005 8 1 3.0639 -1.2310 0.2239 9 6 1.3364 -2.4146 -0.2891 10 6 1.8293 -3.6304 0.1823 11 6 1.1401 -4.8184 -0.1292 12 8 1.5624 -5.8892 0.2699 13 7 0.0154 -4.7724 -0.8668 14 6 -0.8369 -5.7585 -1.3073 15 6 -1.8093 -5.1501 -2.0105 16 7 -1.5725 -3.8292 -2.0084 17 6 -0.4767 -3.5831 -1.3242 18 7 0.1744 -2.4009 -1.0373 19 1 -0.1810 -1.5601 -1.3653 20 1 -0.4849 0.8401 -0.0004 21 1 2.7321 -3.6615 0.7742 22 1 -0.7431 -6.8187 -1.1240 23 1 -2.6402 -5.6416 -2.4947 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527314945.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:54 Heat of formation + Delta-G solvation = 16.686605 kcal Electronic energy + Delta-G solvation = -12790.406051 eV Core-core repulsion = 10410.803619 eV Total energy + Delta-G solvation = -2379.602432 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.71273 -39.60311 -38.71715 -35.46587 -34.01234 -32.02187 -29.92530 -28.27751 -24.48523 -23.59250 -22.42321 -20.24847 -19.42094 -18.56329 -17.56445 -17.33392 -16.73771 -16.23806 -15.01166 -14.77018 -14.58697 -14.36045 -13.94705 -13.56568 -13.30623 -13.22994 -12.68236 -11.99766 -11.46692 -11.39249 -11.19541 -10.86039 -9.95707 -9.21293 -8.56943 -7.21739 0.45941 0.63377 1.39931 1.50668 1.61996 1.64924 2.05757 2.10401 2.17058 2.43965 3.08487 3.71095 4.08745 4.45380 4.64047 4.78026 4.82361 4.99444 5.27223 5.53876 5.62860 5.79532 6.08320 6.24817 6.47036 6.62290 6.88716 7.30935 7.79198 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.050559 B = 0.011005 C = 0.009229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.672699 B = 2543.624302 C = 3033.159402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.042 3.958 3 Si 1.013 2.987 4 H -0.249 1.249 5 H -0.255 1.255 6 H -0.261 1.261 7 C -0.439 4.439 8 H 0.129 0.871 9 C 0.345 3.655 10 C -0.497 4.497 11 C 0.514 3.486 12 O -0.624 6.624 13 N -0.463 5.463 14 C -0.091 4.091 15 C 0.017 3.983 16 N -0.540 5.540 17 C 0.438 3.562 18 N -0.587 5.587 19 H 0.435 0.565 20 H 0.318 0.682 21 H 0.136 0.864 22 H 0.192 0.808 23 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 5.177 -2.979 6.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.180 4.180 3 Si 0.830 3.170 4 H -0.172 1.172 5 H -0.179 1.179 6 H -0.185 1.185 7 C -0.469 4.469 8 H 0.147 0.853 9 C 0.235 3.765 10 C -0.523 4.523 11 C 0.330 3.670 12 O -0.515 6.515 13 N -0.169 5.169 14 C -0.217 4.217 15 C -0.127 4.127 16 N -0.269 5.269 17 C 0.087 3.913 18 N -0.217 5.217 19 H 0.280 0.720 20 H 0.131 0.869 21 H 0.154 0.846 22 H 0.209 0.791 23 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.687 5.142 -3.057 6.216 hybrid contribution 0.507 -0.056 0.515 0.725 sum -1.180 5.086 -2.542 5.807 Atomic orbital electron populations 1.69227 1.09603 1.34201 1.29187 1.27397 0.95747 1.05942 0.88936 0.84652 0.79419 0.73241 0.79664 1.17151 1.17877 1.18542 1.20247 0.99223 0.88907 1.38565 0.85336 1.18210 0.79899 0.95244 0.83114 1.21079 1.13156 0.88966 1.29083 1.17351 0.79346 0.91455 0.78860 1.90627 1.69019 1.33115 1.58754 1.44755 1.22499 1.08699 1.40923 1.23032 0.94897 0.95928 1.07852 1.22916 1.00539 0.87762 1.01452 1.70434 1.13187 1.18501 1.24800 1.20613 0.91956 0.81840 0.96883 1.41442 1.24637 1.05421 1.50169 0.72009 0.86939 0.84606 0.79086 0.75881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -32.08 11.08 21.93 0.24 -31.83 14 2 C 0.04 1.62 5.27 85.47 0.45 2.07 14 3 Si 1.01 28.12 29.59 68.60 2.03 30.15 14 4 H -0.25 -6.80 7.11 99.48 0.71 -6.09 14 5 H -0.25 -6.73 7.11 99.48 0.71 -6.02 14 6 H -0.26 -7.10 7.11 99.48 0.71 -6.39 14 7 C -0.44 -19.07 9.09 23.33 0.21 -18.85 14 8 H 0.13 5.17 7.89 -2.91 -0.02 5.15 14 9 C 0.34 16.93 6.37 38.91 0.25 17.17 14 10 C -0.50 -26.32 9.78 23.19 0.23 -26.09 14 11 C 0.51 28.54 7.58 84.91 0.64 29.19 14 12 O -0.62 -37.24 17.65 -4.74 -0.08 -37.32 14 13 N -0.46 -23.28 2.89 -481.91 -1.39 -24.67 14 14 C -0.09 -3.75 11.55 82.95 0.96 -2.80 14 15 C 0.02 0.62 11.84 83.49 0.99 1.61 14 16 N -0.54 -23.74 11.29 -197.73 -2.23 -25.97 14 17 C 0.44 21.25 8.99 260.22 2.34 23.59 14 18 N -0.59 -27.97 5.02 -188.64 -0.95 -28.92 14 19 H 0.43 19.62 6.51 -92.71 -0.60 19.02 14 20 H 0.32 11.01 8.29 -92.70 -0.77 10.24 14 21 H 0.14 7.01 8.06 -2.91 -0.02 6.99 14 22 H 0.19 6.87 8.06 -2.91 -0.02 6.85 14 23 H 0.22 5.62 8.06 -2.91 -0.02 5.60 14 Total: -1.00 -61.68 216.15 4.34 -57.34 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.66 Total: 35.33 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 6.06 Total: 25.89 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -4.33 Total: -111.39 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.08 Total: -37.32 kcal Atomic # 14 Polarization: 28.12 SS G_CDS: 2.03 Total: 30.15 kcal Total: -61.68 4.34 -57.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527314945.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.025 kcal (2) G-P(sol) polarization free energy of solvation -61.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds