Wall clock time and date at job start Mon Mar 30 2020 02:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99887 * 2 1 4 4 H 1.48499 * 109.47183 * 270.00278 * 3 2 1 5 5 H 1.48498 * 109.47151 * 30.00336 * 3 2 1 6 6 H 1.48493 * 109.46800 * 150.00183 * 3 2 1 7 7 C 1.38804 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99858 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99828 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47005 * 180.02562 * 10 9 7 12 12 S 1.83696 * 110.98302 * 304.20868 * 11 10 9 13 13 C 1.82921 * 97.94574 * 157.41359 * 12 11 10 14 14 C 1.53279 * 107.30345 * 316.50135 * 13 12 11 15 15 S 1.81586 * 110.75433 * 29.46117 * 14 13 12 16 16 H 0.97004 * 120.00229 * 359.97438 * 1 2 3 17 17 H 0.96997 * 120.00181 * 0.02562 * 9 7 2 18 18 H 1.09000 * 109.46900 * 59.99823 * 10 9 7 19 19 H 1.08997 * 109.47080 * 300.00464 * 10 9 7 20 20 H 1.09002 * 110.72411 * 180.70018 * 11 10 9 21 21 H 1.08995 * 109.87660 * 197.07424 * 13 12 11 22 22 H 1.08997 * 109.99805 * 75.99792 * 13 12 11 23 23 H 1.09002 * 109.23193 * 269.11541 * 14 13 12 24 24 H 1.09004 * 109.15907 * 149.76399 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 16 -0.0972 -4.6934 1.4168 13 6 -1.4529 -5.7077 0.7248 14 6 -1.6322 -5.2913 -0.7394 15 16 -0.0603 -4.7133 -1.4411 16 1 -0.4851 0.8401 0.0004 17 1 0.3555 -2.3880 -0.0005 18 1 2.6847 -3.7145 0.8894 19 1 2.6847 -3.7145 -0.8905 20 1 1.5879 -5.7753 0.0113 21 1 -2.3737 -5.5229 1.2780 22 1 -1.1933 -6.7649 0.7803 23 1 -2.3677 -4.4889 -0.7971 24 1 -1.9887 -6.1466 -1.3135 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575453238.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:26 Heat of formation + Delta-G solvation = 18.388519 kcal Electronic energy + Delta-G solvation = -9626.197834 eV Core-core repulsion = 7792.573274 eV Total energy + Delta-G solvation = -1833.624560 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 205.029 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -35.06085 -33.11512 -31.75939 -28.57246 -23.90026 -23.57737 -21.68003 -17.20962 -16.56382 -16.09490 -15.24357 -14.60113 -14.02569 -13.65451 -13.36625 -13.08074 -12.46342 -12.13026 -11.24964 -11.13298 -10.82579 -10.72662 -10.59955 -10.01193 -9.66643 -9.37977 -8.78858 -7.54258 -7.27176 -6.78300 -5.64636 -2.93487 1.54959 1.83427 2.11804 2.94581 3.50117 3.54568 3.56439 4.61667 4.66279 4.77411 5.11699 5.30070 5.42843 5.45588 5.65989 5.72796 6.28640 6.44492 6.49210 7.76821 8.52557 9.65650 10.21514 10.61474 11.57452 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.054362 B = 0.009783 C = 0.009748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.941400 B = 2861.553409 C = 2871.674141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.242 4.242 8 H 0.068 0.932 9 N -0.719 5.719 10 C 0.178 3.822 11 C -0.009 4.009 12 S -0.218 6.218 13 C -0.092 4.092 14 C -0.093 4.093 15 S -0.229 6.229 16 H 0.254 0.746 17 H 0.398 0.602 18 H 0.039 0.961 19 H 0.040 0.960 20 H 0.112 0.888 21 H 0.118 0.882 22 H 0.089 0.911 23 H 0.103 0.897 24 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 -12.720 0.149 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.373 4.373 8 H 0.086 0.914 9 N -0.367 5.367 10 C 0.048 3.952 11 C -0.248 4.248 12 S 0.008 5.992 13 C -0.242 4.242 14 C -0.243 4.243 15 S -0.005 6.005 16 H 0.064 0.936 17 H 0.235 0.765 18 H 0.056 0.944 19 H 0.058 0.942 20 H 0.130 0.870 21 H 0.136 0.864 22 H 0.108 0.892 23 H 0.122 0.878 24 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.876 -11.709 0.151 11.860 hybrid contribution -0.224 -0.140 0.092 0.280 sum -2.100 -11.850 0.243 12.037 Atomic orbital electron populations 1.69700 1.05015 1.25363 1.57248 1.24702 0.95459 0.97444 1.02960 0.86222 0.78630 0.84074 0.77440 1.21789 1.21825 1.20864 1.19178 0.90904 0.84141 1.43102 0.91376 1.42463 1.06514 0.98651 1.89073 1.20316 0.91298 0.84374 0.99233 1.26303 1.00105 1.06100 0.92299 1.88305 1.15900 1.67410 1.27613 1.24038 1.01475 1.02106 0.96606 1.23917 0.99167 1.04826 0.96435 1.87365 1.05094 1.88150 1.19848 0.93640 0.76480 0.94363 0.94246 0.87021 0.86413 0.89240 0.87839 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.06 55.49 0.72 -28.09 14 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 14 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 14 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 14 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 14 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 14 7 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 14 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 14 9 N -0.72 -18.98 5.05 -59.91 -0.30 -19.28 14 10 C 0.18 3.76 6.09 -4.04 -0.02 3.73 14 11 C -0.01 -0.16 3.91 37.16 0.15 -0.01 14 12 S -0.22 -3.83 21.43 -102.47 -2.20 -6.03 14 13 C -0.09 -1.16 6.99 37.30 0.26 -0.90 14 14 C -0.09 -1.25 6.78 37.30 0.25 -1.00 14 15 S -0.23 -4.06 21.46 -102.47 -2.20 -6.25 14 16 H 0.25 7.61 8.31 -40.82 -0.34 7.27 14 17 H 0.40 11.09 6.45 -40.82 -0.26 10.83 14 18 H 0.04 0.80 8.14 -51.93 -0.42 0.38 14 19 H 0.04 0.83 8.14 -51.93 -0.42 0.41 14 20 H 0.11 1.63 8.14 -51.93 -0.42 1.20 14 21 H 0.12 1.29 8.14 -51.93 -0.42 0.86 14 22 H 0.09 0.93 8.14 -51.93 -0.42 0.51 14 23 H 0.10 1.45 8.14 -51.92 -0.42 1.02 14 24 H 0.10 1.05 8.14 -51.92 -0.42 0.63 14 LS Contribution 230.71 15.07 3.48 3.48 Total: -1.00 -31.97 230.71 -7.90 -39.87 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -2.77 Total: 4.06 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 0.39 Total: -5.69 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.42 Total: -47.37 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -4.39 Total: -12.28 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -31.97 -7.90 -39.87 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575453238.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.257 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds