Wall clock time and date at job start Mon Mar 30 2020 02:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99887 * 2 1 4 4 H 1.48499 * 109.47183 * 270.00278 * 3 2 1 5 5 H 1.48498 * 109.47151 * 30.00336 * 3 2 1 6 6 H 1.48493 * 109.46800 * 150.00183 * 3 2 1 7 7 C 1.38804 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99858 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99828 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47005 * 180.02562 * 10 9 7 12 12 S 1.83696 * 110.98302 * 304.20868 * 11 10 9 13 13 C 1.82921 * 97.94574 * 157.41359 * 12 11 10 14 14 C 1.53279 * 107.30345 * 316.50135 * 13 12 11 15 15 S 1.81586 * 110.75433 * 29.46117 * 14 13 12 16 16 H 0.97004 * 120.00229 * 359.97438 * 1 2 3 17 17 H 0.96997 * 120.00181 * 0.02562 * 9 7 2 18 18 H 1.09000 * 109.46900 * 59.99823 * 10 9 7 19 19 H 1.08997 * 109.47080 * 300.00464 * 10 9 7 20 20 H 1.09002 * 110.72411 * 180.70018 * 11 10 9 21 21 H 1.08995 * 109.87660 * 197.07424 * 13 12 11 22 22 H 1.08997 * 109.99805 * 75.99792 * 13 12 11 23 23 H 1.09002 * 109.23193 * 269.11541 * 14 13 12 24 24 H 1.09004 * 109.15907 * 149.76399 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 16 -0.0972 -4.6934 1.4168 13 6 -1.4529 -5.7077 0.7248 14 6 -1.6322 -5.2913 -0.7394 15 16 -0.0603 -4.7133 -1.4411 16 1 -0.4851 0.8401 0.0004 17 1 0.3555 -2.3880 -0.0005 18 1 2.6847 -3.7145 0.8894 19 1 2.6847 -3.7145 -0.8905 20 1 1.5879 -5.7753 0.0113 21 1 -2.3737 -5.5229 1.2780 22 1 -1.1933 -6.7649 0.7803 23 1 -2.3677 -4.4889 -0.7971 24 1 -1.9887 -6.1466 -1.3135 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575453238.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:26 Heat of formation + Delta-G solvation = -2.487811 kcal Electronic energy + Delta-G solvation = -9627.103099 eV Core-core repulsion = 7792.573274 eV Total energy + Delta-G solvation = -1834.529825 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 205.029 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -36.95448 -34.24202 -33.72295 -30.44292 -25.87245 -24.66987 -23.44499 -19.30887 -17.93956 -17.50051 -16.56195 -16.41964 -15.68353 -15.15408 -14.84892 -14.69098 -14.17087 -13.30788 -12.88971 -12.82412 -12.72842 -12.38807 -12.06958 -11.91652 -11.74405 -10.97177 -10.60210 -8.99345 -8.88311 -8.56252 -7.88196 -5.16848 0.27222 0.58603 0.85945 1.48298 1.50787 1.58749 1.76403 2.58754 3.44021 3.56214 3.70442 3.80766 3.87231 4.42510 4.47474 4.52610 4.68048 4.74661 4.78016 5.50569 6.31598 7.40547 8.14148 8.43515 9.35001 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.054362 B = 0.009783 C = 0.009748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.941400 B = 2861.553409 C = 2871.674141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.732 5.732 10 C 0.173 3.827 11 C 0.010 3.990 12 S -0.289 6.289 13 C -0.069 4.069 14 C -0.078 4.078 15 S -0.291 6.291 16 H 0.250 0.750 17 H 0.388 0.612 18 H 0.042 0.958 19 H 0.043 0.957 20 H 0.145 0.855 21 H 0.140 0.860 22 H 0.123 0.877 23 H 0.096 0.904 24 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 -13.973 0.182 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.381 4.381 8 H 0.092 0.908 9 N -0.378 5.378 10 C 0.044 3.956 11 C -0.228 4.228 12 S -0.064 6.064 13 C -0.218 4.218 14 C -0.228 4.228 15 S -0.067 6.067 16 H 0.059 0.941 17 H 0.223 0.777 18 H 0.060 0.940 19 H 0.061 0.939 20 H 0.162 0.838 21 H 0.158 0.842 22 H 0.141 0.859 23 H 0.114 0.886 24 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.925 -12.997 0.184 13.140 hybrid contribution -0.239 0.141 0.077 0.287 sum -2.164 -12.856 0.260 13.039 Atomic orbital electron populations 1.69865 1.06581 1.25801 1.59114 1.25527 0.96344 1.00878 1.03636 0.85152 0.77679 0.79611 0.77350 1.21477 1.22184 1.19508 1.19616 0.91440 0.85400 1.41602 0.90776 1.42604 1.06287 0.99843 1.89045 1.20417 0.92091 0.83889 0.99217 1.26156 0.99397 1.05692 0.91568 1.88497 1.19050 1.69879 1.28935 1.24159 0.99692 1.02533 0.95403 1.23993 0.95672 1.05892 0.97257 1.87518 1.08497 1.89220 1.21416 0.94145 0.77670 0.94008 0.93944 0.83766 0.84201 0.85909 0.88558 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.97 13.06 21.65 0.28 -60.69 14 2 C -0.07 -4.23 5.50 84.86 0.47 -3.76 14 3 Si 0.97 47.53 29.55 68.60 2.03 49.56 14 4 H -0.29 -13.80 7.11 99.48 0.71 -13.09 14 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 14 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 14 7 C -0.25 -14.42 9.99 84.03 0.84 -13.58 14 8 H 0.07 4.10 7.83 -2.91 -0.02 4.07 14 9 N -0.73 -38.90 5.05 -343.44 -1.73 -40.63 14 10 C 0.17 7.23 6.09 86.38 0.53 7.76 14 11 C 0.01 0.35 3.91 71.98 0.28 0.63 14 12 S -0.29 -9.80 21.43 -46.19 -0.99 -10.79 14 13 C -0.07 -1.49 6.99 72.08 0.50 -0.98 14 14 C -0.08 -1.87 6.78 72.08 0.49 -1.38 14 15 S -0.29 -9.95 21.46 -46.19 -0.99 -10.94 14 16 H 0.25 15.26 8.31 -92.71 -0.77 14.49 14 17 H 0.39 21.98 6.45 -92.71 -0.60 21.38 14 18 H 0.04 1.73 8.14 -2.39 -0.02 1.71 14 19 H 0.04 1.76 8.14 -2.39 -0.02 1.74 14 20 H 0.14 3.87 8.14 -2.39 -0.02 3.85 14 21 H 0.14 2.51 8.14 -2.39 -0.02 2.49 14 22 H 0.12 1.94 8.14 -2.39 -0.02 1.92 14 23 H 0.10 2.49 8.14 -2.39 -0.02 2.47 14 24 H 0.14 2.32 8.14 -2.39 -0.02 2.30 14 Total: -1.00 -69.30 230.71 2.29 -67.00 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.59 Total: 17.81 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 3.11 Total: -11.32 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -1.45 Total: -101.32 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Atomic # 16 Polarization: -19.76 SS G_CDS: -1.98 Total: -21.74 kcal Total: -69.30 2.29 -67.00 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575453238.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.514 kcal (2) G-P(sol) polarization free energy of solvation -69.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds