Wall clock time and date at job start Mon Mar 30 2020 02:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37965 * 119.96818 * 2 1 4 4 C 1.38940 * 121.26735 * 179.97438 * 3 2 1 5 5 F 1.35095 * 119.43247 * 179.97438 * 4 3 2 6 6 C 1.37741 * 121.13361 * 359.97438 * 4 3 2 7 7 C 1.40725 * 119.81800 * 0.02562 * 6 4 3 8 8 C 1.40818 * 120.59726 * 180.02562 * 7 6 4 9 9 H 1.07996 * 120.00047 * 150.14543 * 8 7 6 10 10 C 1.40236 * 120.00021 * 330.15174 * 8 7 6 11 11 N 1.30652 * 120.00285 * 161.88759 * 10 8 7 12 12 Si 1.86806 * 119.99812 * 341.88925 * 10 8 7 13 13 H 1.48495 * 109.47306 * 95.39410 * 12 10 8 14 14 H 1.48504 * 109.46997 * 215.39350 * 12 10 8 15 15 H 1.48499 * 109.47094 * 335.39084 * 12 10 8 16 16 C 1.39481 * 119.96037 * 179.97438 * 2 1 3 17 17 C 1.43201 * 120.54622 * 0.04027 * 16 2 1 18 18 N 3.49007 * 80.63962 * 180.02562 * 2 1 3 19 19 H 1.08997 * 109.47192 * 89.99814 * 1 2 3 20 20 H 1.08993 * 109.47250 * 210.00160 * 1 2 3 21 21 H 1.09011 * 109.46832 * 330.00187 * 1 2 3 22 22 H 1.08003 * 119.36459 * 359.69327 * 3 2 1 23 23 H 1.07999 * 120.08591 * 180.02562 * 6 4 3 24 24 H 0.96999 * 120.00358 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1952 0.0000 4 6 3.5852 1.2267 0.0005 5 9 4.2222 2.4180 0.0000 6 6 4.3239 0.0641 0.0016 7 6 3.6687 -1.1813 0.0016 8 6 4.4077 -2.3800 0.0033 9 1 4.0000 -3.2650 0.4689 10 6 5.6730 -2.4244 -0.5997 11 7 6.5026 -3.3904 -0.3070 12 14 6.1725 -1.1024 -1.8214 13 1 6.9447 -0.0460 -1.1194 14 1 7.0134 -1.7051 -2.8866 15 1 4.9563 -0.5053 -2.4293 16 6 2.2036 -1.2084 0.0005 17 6 1.4985 -2.4549 0.0002 18 7 0.9394 -3.4436 -0.0015 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3633 0.8901 0.5139 22 1 1.6453 2.1242 -0.0050 23 1 5.4030 0.1084 0.0024 24 1 7.3777 -3.4214 -0.7243 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575644963.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:55 Heat of formation + Delta-G solvation = -31.240979 kcal Electronic energy + Delta-G solvation = -12421.408915 eV Core-core repulsion = 10019.808226 eV Total energy + Delta-G solvation = -2401.600689 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.75366 -39.77460 -37.00501 -36.01843 -33.64980 -31.79668 -28.41164 -27.39341 -23.66969 -22.62572 -19.57448 -19.28419 -17.96495 -17.15629 -16.57738 -16.36923 -15.51963 -14.94556 -14.86232 -14.40946 -14.18642 -13.94975 -13.80038 -13.35123 -13.33721 -13.04156 -12.72521 -12.53758 -12.09175 -11.83412 -11.69363 -11.11671 -9.65878 -9.34709 -9.15513 -6.80974 0.03240 0.62193 1.24658 1.36333 1.46122 1.96642 2.00425 2.10817 2.51821 3.27357 3.44594 3.53454 3.97992 4.29635 4.42073 4.69037 4.77337 4.86236 4.94502 5.08574 5.35655 5.44287 5.49700 5.68190 5.91827 6.09531 6.39432 6.47362 6.87149 7.89830 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.025730 B = 0.016724 C = 0.010851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.959317 B = 1673.812650 C = 2579.684754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.045 3.955 3 C -0.269 4.269 4 C 0.167 3.833 5 F -0.149 7.149 6 C -0.296 4.296 7 C 0.139 3.861 8 C -0.447 4.447 9 H 0.063 0.937 10 C 0.054 3.946 11 N -0.808 5.808 12 Si 0.960 3.040 13 H -0.249 1.249 14 H -0.268 1.268 15 H -0.243 1.243 16 C -0.195 4.195 17 C 0.307 3.693 18 N -0.516 5.516 19 H 0.089 0.911 20 H 0.053 0.947 21 H 0.101 0.899 22 H 0.154 0.846 23 H 0.118 0.882 24 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 10.028 -2.075 10.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.042 3.958 3 C -0.289 4.289 4 C 0.147 3.853 5 F -0.127 7.127 6 C -0.316 4.316 7 C 0.133 3.867 8 C -0.474 4.474 9 H 0.081 0.919 10 C -0.167 4.167 11 N -0.430 5.430 12 Si 0.780 3.220 13 H -0.174 1.174 14 H -0.194 1.194 15 H -0.166 1.166 16 C -0.201 4.201 17 C -0.003 4.003 18 N -0.195 5.195 19 H 0.107 0.893 20 H 0.072 0.928 21 H 0.119 0.881 22 H 0.171 0.829 23 H 0.136 0.864 24 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.724 8.324 -2.063 9.349 hybrid contribution 1.078 0.258 -0.165 1.121 sum -2.645 8.582 -2.228 9.253 Atomic orbital electron populations 1.20931 0.88903 1.03591 1.03719 1.19618 0.96447 0.89845 0.89902 1.20347 0.90831 0.98747 1.18954 1.17699 0.91287 0.79222 0.97124 1.91416 1.82796 1.44903 1.93609 1.20888 0.99316 0.91358 1.20005 1.18250 0.89759 0.91890 0.86761 1.19564 0.99918 0.97023 1.30857 0.91911 1.27043 0.94140 0.98286 0.97252 1.69593 1.07676 1.31129 1.34623 0.85556 0.80313 0.77987 0.78113 1.17396 1.19367 1.16627 1.17028 0.91073 0.86361 1.25617 1.25681 0.91118 0.92436 0.91061 1.81031 1.12209 1.11260 1.14985 0.89282 0.92817 0.88058 0.82855 0.86396 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 9.61 71.24 0.68 -2.33 14 2 C 0.04 1.56 5.91 -19.63 -0.12 1.45 14 3 C -0.27 -8.93 9.60 22.37 0.21 -8.71 14 4 C 0.17 6.33 7.26 22.32 0.16 6.49 14 5 F -0.15 -5.29 17.24 44.97 0.78 -4.52 14 6 C -0.30 -12.74 7.15 22.76 0.16 -12.58 14 7 C 0.14 6.53 5.27 -19.87 -0.10 6.43 14 8 C -0.45 -23.30 9.03 23.39 0.21 -23.09 14 9 H 0.06 3.64 7.66 -2.91 -0.02 3.62 14 10 C 0.05 2.65 5.41 85.35 0.46 3.11 14 11 N -0.81 -40.53 13.92 21.87 0.30 -40.22 14 12 Si 0.96 38.39 24.53 68.60 1.68 40.07 14 13 H -0.25 -9.38 6.72 99.48 0.67 -8.71 14 14 H -0.27 -9.98 7.11 99.48 0.71 -9.27 14 15 H -0.24 -9.87 6.86 99.48 0.68 -9.19 14 16 C -0.20 -8.39 5.94 -19.57 -0.12 -8.51 14 17 C 0.31 13.90 12.86 88.33 1.14 15.03 14 18 N -0.52 -24.31 18.54 19.00 0.35 -23.96 14 19 H 0.09 2.08 8.14 -2.39 -0.02 2.06 14 20 H 0.05 1.53 7.10 -2.39 -0.02 1.51 14 21 H 0.10 2.01 8.08 -2.38 -0.02 1.99 14 22 H 0.15 3.98 8.06 -2.91 -0.02 3.95 14 23 H 0.12 5.05 4.76 -2.91 -0.01 5.04 14 24 H 0.31 13.50 8.29 -92.71 -0.77 12.73 14 Total: -1.00 -54.59 225.04 6.98 -47.61 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: 1.17 Total: 3.73 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 2.70 Total: -22.71 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: 0.66 Total: -64.18 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.78 Total: -4.52 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.68 Total: 40.07 kcal Total: -54.59 6.98 -47.61 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644963.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.368 kcal (2) G-P(sol) polarization free energy of solvation -54.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds