Wall clock time and date at job start Mon Mar 30 2020 02:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38159 * 119.80670 * 2 1 4 4 C 1.40050 * 120.39411 * 179.72883 * 3 2 1 5 5 C 1.43198 * 119.99983 * 180.27391 * 4 3 2 6 6 N 4.80778 * 134.13995 * 0.26897 * 2 1 3 7 7 C 1.39082 * 120.00681 * 0.53862 * 4 3 2 8 8 C 1.40423 * 119.61275 * 359.73294 * 7 4 3 9 9 C 1.41349 * 120.19168 * 180.02562 * 8 7 4 10 10 H 1.08002 * 119.99967 * 150.10845 * 9 8 7 11 11 C 1.39920 * 120.00038 * 330.10628 * 9 8 7 12 12 N 1.30852 * 120.00051 * 161.76668 * 11 9 8 13 13 Si 1.86801 * 119.99928 * 341.77078 * 11 9 8 14 14 H 1.48504 * 109.47070 * 95.40788 * 13 11 9 15 15 H 1.48504 * 109.47004 * 215.40407 * 13 11 9 16 16 H 1.48494 * 109.47099 * 335.40438 * 13 11 9 17 17 C 1.38099 * 119.80347 * 180.26429 * 2 1 3 18 18 F 1.35101 * 120.00941 * 0.02738 * 17 2 1 19 19 H 1.09006 * 109.47298 * 269.73532 * 1 2 3 20 20 H 1.08997 * 109.47473 * 149.73423 * 1 2 3 21 21 H 1.08997 * 109.47160 * 29.72800 * 1 2 3 22 22 H 1.08003 * 119.80312 * 359.97438 * 3 2 1 23 23 H 1.08000 * 120.19229 * 179.75631 * 7 4 3 24 24 H 0.96996 * 120.00552 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1938 1.1988 0.0000 4 6 3.5942 1.2132 0.0057 5 6 4.2974 2.4606 0.0116 6 7 4.8552 3.4502 0.0162 7 6 4.3021 0.0160 0.0001 8 6 3.6044 -1.2026 -0.0056 9 6 4.3115 -2.4265 -0.0108 10 1 3.8793 -3.3018 0.4513 11 6 5.5713 -2.5041 -0.6145 12 7 6.3755 -3.4950 -0.3254 13 14 6.1053 -1.1930 -1.8333 14 1 6.9079 -0.1605 -1.1296 15 1 6.9274 -1.8157 -2.9018 16 1 4.9052 -0.5605 -2.4373 17 6 2.1934 -1.1983 -0.0055 18 9 1.5141 -2.3661 -0.0115 19 1 -0.3634 -0.0047 1.0277 20 1 -0.3634 -0.8875 -0.5179 21 1 -0.3633 0.8924 -0.5096 22 1 1.6474 2.1304 -0.0004 23 1 5.3820 0.0236 0.0005 24 1 7.2488 -3.5490 -0.7442 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650071.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:14 Heat of formation + Delta-G solvation = -14.215675 kcal Electronic energy + Delta-G solvation = -12426.397164 eV Core-core repulsion = 10025.534748 eV Total energy + Delta-G solvation = -2400.862417 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.63881 -38.29194 -35.85136 -34.16361 -32.07387 -30.51573 -26.52467 -25.47331 -22.52727 -21.12668 -17.79414 -16.96040 -16.55506 -15.76292 -14.88794 -14.54332 -13.48552 -13.27664 -13.14173 -12.84575 -12.79229 -12.66233 -12.22436 -12.15698 -11.83910 -11.39210 -11.12723 -10.96457 -10.39823 -10.19667 -9.96493 -9.37734 -7.98243 -7.73917 -7.20458 -4.75718 1.58818 2.20000 2.92726 3.03635 3.13979 3.19180 3.53235 3.77092 4.28947 4.57364 4.98318 5.35587 5.49154 5.77284 5.93517 6.03607 6.12529 6.28571 6.53623 6.73995 6.99468 7.02739 7.15337 7.30257 7.63035 7.99417 8.08518 8.23332 8.45516 9.80389 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.024289 B = 0.017004 C = 0.010717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.496095 B = 1646.315304 C = 2611.957227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.084 4.084 3 C -0.175 4.175 4 C -0.003 4.003 5 C 0.275 3.725 6 N -0.459 5.459 7 C -0.177 4.177 8 C 0.064 3.936 9 C -0.428 4.428 10 H 0.101 0.899 11 C 0.086 3.914 12 N -0.788 5.788 13 Si 0.899 3.101 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.238 1.238 17 C 0.018 3.982 18 F -0.148 7.148 19 H 0.064 0.936 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.114 0.886 23 H 0.117 0.883 24 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 3.062 -1.226 6.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.085 4.085 3 C -0.196 4.196 4 C -0.007 4.007 5 C -0.039 4.039 6 N -0.135 5.135 7 C -0.199 4.199 8 C 0.060 3.940 9 C -0.455 4.455 10 H 0.119 0.881 11 C -0.136 4.136 12 N -0.410 5.410 13 Si 0.724 3.276 14 H -0.191 1.191 15 H -0.209 1.209 16 H -0.161 1.161 17 C -0.003 4.003 18 F -0.126 7.126 19 H 0.083 0.917 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.132 0.868 23 H 0.134 0.866 24 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.331 4.337 -1.226 6.251 hybrid contribution 0.199 -0.193 -0.461 0.537 sum -4.132 4.145 -1.687 6.090 Atomic orbital electron populations 1.20633 0.91652 1.02219 1.01827 1.19296 0.95350 0.91765 1.02130 1.20004 0.90921 0.96373 1.12343 1.15776 0.92331 0.85769 1.06814 1.26173 0.92452 0.92840 0.92389 1.81108 1.09700 1.11847 1.10848 1.20906 0.98556 0.90277 1.10127 1.17509 0.90027 0.93492 0.93012 1.19448 0.99466 0.96467 1.30155 0.88096 1.26167 0.94836 0.96308 0.96275 1.69667 1.07693 1.29333 1.34351 0.86461 0.80551 0.80306 0.80234 1.19115 1.20865 1.16128 1.17718 0.89593 0.80037 1.12970 1.91326 1.79745 1.47084 1.94490 0.91687 0.91766 0.91950 0.86841 0.86577 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.82 36.01 0.35 -1.22 14 2 C -0.08 -1.58 5.87 -104.70 -0.61 -2.19 14 3 C -0.17 -3.19 9.39 -38.93 -0.37 -3.55 14 4 C 0.00 -0.06 5.73 -106.98 -0.61 -0.68 14 5 C 0.28 5.44 15.32 -22.47 -0.34 5.10 14 6 N -0.46 -9.37 18.54 41.84 0.78 -8.59 14 7 C -0.18 -3.89 6.87 -38.45 -0.26 -4.15 14 8 C 0.06 1.49 5.11 -106.81 -0.55 0.94 14 9 C -0.43 -10.80 9.25 -37.77 -0.35 -11.15 14 10 H 0.10 2.70 7.97 -52.49 -0.42 2.29 14 11 C 0.09 2.10 5.40 -17.34 -0.09 2.00 14 12 N -0.79 -19.62 13.93 55.55 0.77 -18.85 14 13 Si 0.90 19.29 24.52 -169.99 -4.17 15.12 14 14 H -0.27 -5.60 6.71 56.52 0.38 -5.22 14 15 H -0.28 -5.83 7.11 56.52 0.40 -5.42 14 16 H -0.24 -5.15 6.86 56.52 0.39 -4.76 14 17 C 0.02 0.39 7.25 -38.55 -0.28 0.11 14 18 F -0.15 -3.24 15.94 2.25 0.04 -3.20 14 19 H 0.06 0.87 8.14 -51.93 -0.42 0.45 14 20 H 0.06 0.94 7.62 -51.93 -0.40 0.54 14 21 H 0.06 0.78 8.08 -51.93 -0.42 0.36 14 22 H 0.11 1.78 8.06 -52.48 -0.42 1.35 14 23 H 0.12 2.57 4.74 -52.49 -0.25 2.32 14 24 H 0.29 6.52 8.30 -40.82 -0.34 6.18 14 LS Contribution 226.51 15.07 3.41 3.41 Total: -1.00 -25.03 226.51 -3.78 -28.82 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.91 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -3.12 Total: -14.79 kcal Atomic # 7 Polarization: -28.99 SS G_CDS: 1.55 Total: -27.44 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.17 Total: 15.12 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -25.03 -3.78 -28.82 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650071.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.600 kcal (2) G-P(sol) polarization free energy of solvation -25.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds