Wall clock time and date at job start Mon Mar 30 2020 02:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38628 * 119.38386 * 2 1 4 4 C 1.38345 * 121.25800 * 180.02562 * 3 2 1 5 5 F 1.35094 * 120.01024 * 179.97438 * 4 3 2 6 6 C 1.39713 * 119.97603 * 359.68498 * 4 3 2 7 7 C 1.43197 * 120.59101 * 180.29794 * 6 4 3 8 8 N 4.81128 * 138.05714 * 359.70833 * 3 1 2 9 9 C 1.46502 * 118.82220 * 0.58157 * 6 4 3 10 10 C 1.40782 * 120.60135 * 179.72015 * 9 6 4 11 11 H 1.08000 * 120.00250 * 25.91531 * 10 9 6 12 12 C 1.40258 * 120.00070 * 205.91292 * 10 9 6 13 13 N 1.30650 * 119.99748 * 199.06158 * 12 10 9 14 14 Si 1.86797 * 119.99822 * 19.06464 * 12 10 9 15 15 H 1.48497 * 109.47355 * 264.89978 * 14 12 10 16 16 H 1.48503 * 109.47379 * 24.90605 * 14 12 10 17 17 H 1.48507 * 109.46828 * 144.90374 * 14 12 10 18 18 C 1.37468 * 119.38068 * 180.02562 * 2 1 3 19 19 H 1.09004 * 109.47103 * 269.97927 * 1 2 3 20 20 H 1.09000 * 109.46854 * 29.97552 * 1 2 3 21 21 H 1.08998 * 109.47597 * 149.97550 * 1 2 3 22 22 H 1.07991 * 119.37105 * 0.02562 * 3 2 1 23 23 H 0.97003 * 119.99563 * 179.97438 * 13 12 10 24 24 H 1.08007 * 120.05063 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.2079 0.0000 4 6 3.5699 1.2532 -0.0005 5 9 4.2070 2.4445 -0.0010 6 6 4.3072 0.0664 0.0056 7 6 5.7388 0.0979 0.0115 8 7 6.8746 0.1230 0.0164 9 6 3.5897 -1.2108 -0.0006 10 6 4.2951 -2.4291 -0.0006 11 1 5.2920 -2.4760 0.4121 12 6 3.7033 -3.5822 -0.5368 13 7 4.1659 -4.7620 -0.2189 14 14 2.2538 -3.4309 -1.7053 15 1 0.9869 -3.5674 -0.9427 16 1 2.2907 -2.1038 -2.3706 17 1 2.3316 -4.5015 -2.7315 18 6 2.1815 -1.1979 -0.0005 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3634 -0.8897 -0.5142 22 1 1.6271 2.1312 0.0004 23 1 3.7563 -5.5594 -0.5894 24 1 1.6322 -2.1278 -0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650125.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:25 Heat of formation + Delta-G solvation = -16.753039 kcal Electronic energy + Delta-G solvation = -12423.680467 eV Core-core repulsion = 10022.708022 eV Total energy + Delta-G solvation = -2400.972445 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.16770 -38.00609 -35.34512 -34.21587 -31.84315 -30.36698 -26.75955 -25.82420 -21.78317 -21.03791 -17.99619 -17.75998 -15.98425 -15.42915 -15.09201 -14.85915 -13.99101 -13.24566 -13.10526 -12.74933 -12.56894 -12.45397 -12.12242 -11.93376 -11.68786 -11.36428 -11.07626 -10.92320 -10.30539 -10.15173 -10.01435 -9.50754 -7.95737 -7.70902 -7.43932 -4.99009 1.76049 2.28231 2.84663 2.97772 3.07119 3.64071 3.79424 3.83959 4.29585 4.98790 5.05911 5.22803 5.56438 5.71572 6.01765 6.11872 6.15555 6.21152 6.38053 6.70036 6.95919 7.01546 7.20265 7.44177 7.66972 7.85525 8.14962 8.26329 8.68666 9.54009 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.016276 C = 0.010757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.484037 B = 1719.897106 C = 2602.443714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.003 3.997 3 C -0.290 4.290 4 C 0.195 3.805 5 F -0.152 7.152 6 C -0.210 4.210 7 C 0.297 3.703 8 N -0.490 5.490 9 C 0.142 3.858 10 C -0.400 4.400 11 H 0.100 0.900 12 C 0.081 3.919 13 N -0.764 5.764 14 Si 0.919 3.081 15 H -0.261 1.261 16 H -0.234 1.234 17 H -0.285 1.285 18 C -0.248 4.248 19 H 0.068 0.932 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.113 0.887 23 H 0.297 0.703 24 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 2.847 -1.457 9.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.002 3.998 3 C -0.310 4.310 4 C 0.173 3.827 5 F -0.131 7.131 6 C -0.217 4.217 7 C -0.013 4.013 8 N -0.168 5.168 9 C 0.136 3.864 10 C -0.425 4.425 11 H 0.118 0.882 12 C -0.145 4.145 13 N -0.384 5.384 14 Si 0.743 3.257 15 H -0.187 1.187 16 H -0.157 1.157 17 H -0.212 1.212 18 C -0.267 4.267 19 H 0.086 0.914 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.131 0.869 23 H 0.108 0.892 24 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.097 2.618 -1.435 7.699 hybrid contribution -0.810 -0.022 -0.354 0.885 sum -7.907 2.596 -1.789 8.513 Atomic orbital electron populations 1.20830 0.92475 1.01973 1.01877 1.19217 0.94586 0.92361 0.93681 1.19900 0.90937 0.97759 1.22398 1.17398 0.90219 0.78218 0.96890 1.91406 1.82826 1.45198 1.93637 1.16677 0.83862 0.92737 1.28433 1.25346 0.92362 0.91966 0.91674 1.81023 1.12382 1.09122 1.14303 1.18195 0.90858 0.89985 0.87401 1.19741 1.03180 0.90345 1.29248 0.88209 1.26491 0.98115 0.94065 0.95857 1.69587 1.36829 0.99631 1.32334 0.86194 0.79403 0.80503 0.79557 1.18689 1.15711 1.21170 1.20812 0.93440 0.96514 1.15892 0.91361 0.91933 0.92095 0.86864 0.89186 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.98 36.01 0.36 -1.28 14 2 C 0.00 0.05 5.86 -104.76 -0.61 -0.57 14 3 C -0.29 -5.52 9.59 -39.40 -0.38 -5.90 14 4 C 0.19 4.14 7.28 -38.99 -0.28 3.85 14 5 F -0.15 -3.16 16.82 2.25 0.04 -3.12 14 6 C -0.21 -4.90 5.95 -104.09 -0.62 -5.52 14 7 C 0.30 7.25 13.98 -22.47 -0.31 6.94 14 8 N -0.49 -12.29 18.54 41.84 0.78 -11.51 14 9 C 0.14 3.32 5.35 -104.63 -0.56 2.76 14 10 C -0.40 -9.96 9.09 -37.86 -0.34 -10.31 14 11 H 0.10 2.71 7.56 -52.49 -0.40 2.32 14 12 C 0.08 1.88 5.42 -17.30 -0.09 1.79 14 13 N -0.76 -18.16 13.92 55.56 0.77 -17.39 14 14 Si 0.92 18.07 24.46 -169.99 -4.16 13.91 14 15 H -0.26 -4.79 6.66 56.52 0.38 -4.41 14 16 H -0.23 -4.71 6.81 56.52 0.38 -4.33 14 17 H -0.28 -5.42 7.11 56.52 0.40 -5.01 14 18 C -0.25 -5.20 6.80 -38.88 -0.26 -5.47 14 19 H 0.07 0.87 8.14 -51.93 -0.42 0.45 14 20 H 0.06 0.78 8.07 -51.93 -0.42 0.36 14 21 H 0.06 0.83 8.07 -51.93 -0.42 0.41 14 22 H 0.11 1.87 8.06 -52.49 -0.42 1.45 14 23 H 0.30 6.22 8.29 -40.82 -0.34 5.89 14 24 H 0.11 2.27 4.32 -52.48 -0.23 2.05 14 LS Contribution 226.11 15.07 3.41 3.41 Total: -1.00 -25.49 226.11 -3.76 -29.25 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -1.48 Total: -0.85 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -3.11 Total: -13.70 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 1.55 Total: -28.90 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.04 Total: -3.12 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -4.16 Total: 13.91 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -25.49 -3.76 -29.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650125.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.494 kcal (2) G-P(sol) polarization free energy of solvation -25.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds