Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47085 * 2 1 4 4 C 1.38660 * 119.74868 * 265.00058 * 3 2 1 5 5 C 1.37590 * 120.24715 * 179.72132 * 4 3 2 6 6 C 1.50706 * 120.12866 * 180.02562 * 5 4 3 7 7 C 1.40731 * 119.74823 * 0.02562 * 5 4 3 8 8 C 1.41400 * 120.24848 * 180.02562 * 7 5 4 9 9 H 1.07999 * 119.99598 * 25.39239 * 8 7 5 10 10 C 1.39950 * 120.00057 * 205.38920 * 8 7 5 11 11 N 1.30819 * 119.99773 * 15.28168 * 10 8 7 12 12 Si 1.86797 * 119.99644 * 195.27640 * 10 8 7 13 13 H 1.48492 * 109.47219 * 60.00267 * 12 10 8 14 14 H 1.48505 * 109.46941 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46980 * 299.99838 * 12 10 8 16 16 C 1.40703 * 119.51205 * 359.97438 * 7 5 4 17 17 C 1.37645 * 119.74147 * 0.02562 * 16 7 5 18 18 C 1.50698 * 119.87493 * 179.97438 * 17 16 7 19 19 H 1.09004 * 109.46827 * 60.00236 * 1 2 3 20 20 H 1.09007 * 109.47087 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47543 * 300.00134 * 1 2 3 22 22 H 1.09005 * 109.47304 * 239.99616 * 2 1 3 23 23 H 1.08994 * 109.46976 * 120.00294 * 2 1 3 24 24 H 1.07999 * 119.87397 * 359.69387 * 4 3 2 25 25 H 1.08998 * 109.46757 * 90.00193 * 6 5 4 26 26 H 1.08993 * 109.47280 * 210.00016 * 6 5 4 27 27 H 1.09001 * 109.46998 * 330.00345 * 6 5 4 28 28 H 0.97005 * 119.99510 * 180.02562 * 11 10 8 29 29 H 1.07994 * 120.13196 * 179.97438 * 16 7 5 30 30 H 1.08996 * 109.47221 * 269.99646 * 18 17 16 31 31 H 1.09003 * 109.47184 * 29.99822 * 18 17 16 32 32 H 1.08998 * 109.46950 * 149.99110 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0345 -1.1993 5 6 2.8147 3.3333 -1.2117 6 6 3.1702 3.9979 -2.5168 7 6 2.9461 4.0387 -0.0011 8 6 3.4113 5.3740 -0.0016 9 1 3.2825 5.9903 -0.8791 10 6 4.0385 5.8969 1.1349 11 7 4.4638 5.0932 2.0754 12 14 4.2686 7.7425 1.3087 13 1 2.9425 8.4104 1.2916 14 1 4.9551 8.0370 2.5922 15 1 5.0918 8.2471 0.1804 16 6 2.6100 3.4059 1.2098 17 6 2.1577 2.1059 1.1984 18 6 1.7975 1.4250 2.4936 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.2598 1.4909 -2.1270 25 1 2.2894 4.4952 -2.9229 26 1 3.9569 4.7330 -2.3477 27 1 3.5212 3.2460 -3.2236 28 1 4.8982 5.4557 2.8633 29 1 2.7074 3.9377 2.1447 30 1 2.6771 0.9238 2.8975 31 1 1.4425 2.1678 3.2081 32 1 1.0122 0.6912 2.3122 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575695269.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = -13.973537 kcal Electronic energy + Delta-G solvation = -13048.357937 eV Core-core repulsion = 10972.225331 eV Total energy + Delta-G solvation = -2076.132606 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.15514 -34.54731 -32.83141 -31.57118 -28.80644 -28.04250 -25.38884 -23.75781 -22.14908 -20.42349 -18.63791 -16.76392 -15.28187 -14.55197 -14.16254 -13.62946 -12.98929 -12.91734 -12.56022 -12.28808 -12.02863 -11.60691 -11.53401 -11.43684 -11.24196 -11.08245 -10.84245 -10.69209 -10.28968 -10.27739 -9.88446 -9.37488 -9.17704 -9.04830 -7.19416 -7.01625 -6.65361 -4.27339 2.81462 3.05937 3.08825 3.11673 3.25758 3.96933 4.63793 5.59883 5.70197 5.75306 6.03190 6.13455 6.19718 6.32060 6.39188 6.46460 6.49762 6.53795 6.55341 6.66613 6.73765 6.77889 6.87205 7.06258 7.16537 7.43896 7.53535 7.73557 7.98336 8.14575 8.21950 8.39316 8.70418 8.97239 9.06446 10.26131 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.010440 C = 0.008738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.306948 B = 2681.250161 C = 3203.544075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 C -0.202 4.202 4 C -0.088 4.088 5 C -0.199 4.199 6 C -0.084 4.084 7 C 0.111 3.889 8 C -0.461 4.461 9 H 0.077 0.923 10 C 0.075 3.925 11 N -0.797 5.797 12 Si 0.906 3.094 13 H -0.265 1.265 14 H -0.279 1.279 15 H -0.266 1.266 16 C -0.157 4.157 17 C -0.076 4.076 18 C -0.104 4.104 19 H 0.049 0.951 20 H 0.039 0.961 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.036 0.964 28 H 0.279 0.721 29 H 0.119 0.881 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 -3.204 -0.921 4.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 C -0.203 4.203 4 C -0.106 4.106 5 C -0.200 4.200 6 C -0.140 4.140 7 C 0.109 3.891 8 C -0.490 4.490 9 H 0.096 0.904 10 C -0.142 4.142 11 N -0.423 5.423 12 Si 0.731 3.269 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.191 1.191 16 C -0.176 4.176 17 C -0.077 4.077 18 C -0.161 4.161 19 H 0.068 0.932 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.017 -3.197 -0.692 4.450 hybrid contribution 0.243 0.858 0.158 0.906 sum -2.774 -2.339 -0.534 3.667 Atomic orbital electron populations 1.21785 0.96830 0.99645 1.01759 1.20174 0.94521 0.94925 1.00258 1.18938 1.12760 0.95623 0.92976 1.20232 1.00485 0.94566 0.95315 1.19736 1.10852 0.94533 0.94926 1.20386 0.99987 0.99148 0.94510 1.17452 0.88728 0.92589 0.90363 1.19529 1.33317 0.97029 0.99168 0.90443 1.25893 0.93406 0.99896 0.95025 1.69818 1.28046 1.36617 1.07851 0.86409 0.79355 0.82922 0.78245 1.18948 1.20428 1.19091 1.21228 1.03502 0.93918 0.99001 1.19328 1.00453 0.94948 0.92938 1.20705 1.00049 0.99459 0.95847 0.93182 0.94156 0.92906 0.93281 0.92871 0.89680 0.94206 0.92141 0.94535 0.91033 0.86285 0.92940 0.93119 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.69 37.16 0.36 -1.92 16 2 C -0.06 -1.11 5.36 -27.88 -0.15 -1.26 16 3 C -0.20 -4.51 5.16 -104.33 -0.54 -5.05 16 4 C -0.09 -2.03 9.30 -39.66 -0.37 -2.40 16 5 C -0.20 -4.93 5.94 -103.91 -0.62 -5.55 16 6 C -0.08 -1.79 9.41 36.01 0.34 -1.45 16 7 C 0.11 2.99 5.57 -106.82 -0.60 2.40 16 8 C -0.46 -12.28 8.15 -37.74 -0.31 -12.59 16 9 H 0.08 1.98 6.86 -52.49 -0.36 1.62 16 10 C 0.07 1.90 5.19 -17.34 -0.09 1.81 16 11 N -0.80 -20.89 10.87 55.55 0.60 -20.29 16 12 Si 0.91 18.94 29.59 -169.99 -5.03 13.91 16 13 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 14 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 16 C -0.16 -4.15 8.33 -38.87 -0.32 -4.47 16 17 C -0.08 -1.80 5.87 -104.70 -0.61 -2.41 16 18 C -0.10 -2.02 9.20 36.00 0.33 -1.69 16 19 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 20 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.85 6.89 -51.93 -0.36 0.50 16 22 H 0.05 0.83 8.05 -51.93 -0.42 0.42 16 23 H 0.05 0.92 6.97 -51.93 -0.36 0.56 16 24 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.32 6.77 -51.93 -0.35 0.97 16 27 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 29 H 0.12 3.25 6.13 -52.49 -0.32 2.93 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.05 0.92 5.38 -51.93 -0.28 0.64 16 LS Contribution 261.07 15.07 3.93 3.93 Total: -1.00 -27.35 261.07 -7.60 -34.95 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.54 Total: 2.07 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: -2.57 Total: -34.57 kcal Atomic # 7 Polarization: -20.89 SS G_CDS: 0.60 Total: -20.29 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.35 -7.60 -34.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575695269.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.977 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds