Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47085 * 2 1 4 4 C 1.38660 * 119.74868 * 265.00058 * 3 2 1 5 5 C 1.37590 * 120.24715 * 179.72132 * 4 3 2 6 6 C 1.50706 * 120.12866 * 180.02562 * 5 4 3 7 7 C 1.40731 * 119.74823 * 0.02562 * 5 4 3 8 8 C 1.41400 * 120.24848 * 180.02562 * 7 5 4 9 9 H 1.07999 * 119.99598 * 25.39239 * 8 7 5 10 10 C 1.39950 * 120.00057 * 205.38920 * 8 7 5 11 11 N 1.30819 * 119.99773 * 15.28168 * 10 8 7 12 12 Si 1.86797 * 119.99644 * 195.27640 * 10 8 7 13 13 H 1.48492 * 109.47219 * 60.00267 * 12 10 8 14 14 H 1.48505 * 109.46941 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46980 * 299.99838 * 12 10 8 16 16 C 1.40703 * 119.51205 * 359.97438 * 7 5 4 17 17 C 1.37645 * 119.74147 * 0.02562 * 16 7 5 18 18 C 1.50698 * 119.87493 * 179.97438 * 17 16 7 19 19 H 1.09004 * 109.46827 * 60.00236 * 1 2 3 20 20 H 1.09007 * 109.47087 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47543 * 300.00134 * 1 2 3 22 22 H 1.09005 * 109.47304 * 239.99616 * 2 1 3 23 23 H 1.08994 * 109.46976 * 120.00294 * 2 1 3 24 24 H 1.07999 * 119.87397 * 359.69387 * 4 3 2 25 25 H 1.08998 * 109.46757 * 90.00193 * 6 5 4 26 26 H 1.08993 * 109.47280 * 210.00016 * 6 5 4 27 27 H 1.09001 * 109.46998 * 330.00345 * 6 5 4 28 28 H 0.97005 * 119.99510 * 180.02562 * 11 10 8 29 29 H 1.07994 * 120.13196 * 179.97438 * 16 7 5 30 30 H 1.08996 * 109.47221 * 269.99646 * 18 17 16 31 31 H 1.09003 * 109.47184 * 29.99822 * 18 17 16 32 32 H 1.08998 * 109.46950 * 149.99110 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0345 -1.1993 5 6 2.8147 3.3333 -1.2117 6 6 3.1702 3.9979 -2.5168 7 6 2.9461 4.0387 -0.0011 8 6 3.4113 5.3740 -0.0016 9 1 3.2825 5.9903 -0.8791 10 6 4.0385 5.8969 1.1349 11 7 4.4638 5.0932 2.0754 12 14 4.2686 7.7425 1.3087 13 1 2.9425 8.4104 1.2916 14 1 4.9551 8.0370 2.5922 15 1 5.0918 8.2471 0.1804 16 6 2.6100 3.4059 1.2098 17 6 2.1577 2.1059 1.1984 18 6 1.7975 1.4250 2.4936 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.2598 1.4909 -2.1270 25 1 2.2894 4.4952 -2.9229 26 1 3.9569 4.7330 -2.3477 27 1 3.5212 3.2460 -3.2236 28 1 4.8982 5.4557 2.8633 29 1 2.7074 3.9377 2.1447 30 1 2.6771 0.9238 2.8975 31 1 1.4425 2.1678 3.2081 32 1 1.0122 0.6912 2.3122 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575695269.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = -26.944223 kcal Electronic energy + Delta-G solvation = -13048.920388 eV Core-core repulsion = 10972.225331 eV Total energy + Delta-G solvation = -2076.695057 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.95578 -36.30103 -34.63326 -33.21965 -30.57022 -29.73771 -27.19448 -25.42140 -23.80503 -22.20182 -20.42417 -18.66273 -17.08114 -16.23932 -15.81791 -15.35792 -14.64500 -14.53028 -14.28235 -13.94238 -13.55950 -13.23574 -13.16343 -13.11831 -12.84214 -12.79314 -12.47969 -12.37300 -11.92610 -11.75849 -11.62651 -11.18142 -10.93785 -10.90714 -9.09031 -8.87400 -8.52504 -6.24553 1.01500 1.17917 1.37086 1.47907 1.54430 2.21958 2.76465 3.72046 4.27439 4.32451 4.51773 4.53541 4.68511 4.73415 4.76269 4.88279 4.93601 5.03186 5.08783 5.10825 5.16177 5.16426 5.26099 5.38589 5.51683 5.55072 5.69012 5.87119 6.13190 6.24935 6.36347 6.49981 6.79612 7.03066 7.15643 8.40157 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.010440 C = 0.008738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.306948 B = 2681.250161 C = 3203.544075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.100 4.100 5 C -0.218 4.218 6 C -0.078 4.078 7 C 0.073 3.927 8 C -0.494 4.494 9 H 0.076 0.924 10 C 0.031 3.969 11 N -0.832 5.832 12 Si 0.978 3.022 13 H -0.263 1.263 14 H -0.270 1.270 15 H -0.260 1.260 16 C -0.187 4.187 17 C -0.089 4.089 18 C -0.099 4.099 19 H 0.044 0.956 20 H 0.072 0.928 21 H 0.046 0.954 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.112 0.888 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.284 0.716 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 -4.277 -1.407 5.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 C -0.199 4.199 4 C -0.118 4.118 5 C -0.220 4.220 6 C -0.135 4.135 7 C 0.071 3.929 8 C -0.524 4.524 9 H 0.094 0.906 10 C -0.182 4.182 11 N -0.459 5.459 12 Si 0.799 3.201 13 H -0.187 1.187 14 H -0.194 1.194 15 H -0.184 1.184 16 C -0.207 4.207 17 C -0.090 4.090 18 C -0.155 4.155 19 H 0.063 0.937 20 H 0.091 0.909 21 H 0.065 0.935 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.129 0.871 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.700 -4.286 -1.186 5.785 hybrid contribution 0.409 1.040 0.265 1.149 sum -3.291 -3.245 -0.921 4.713 Atomic orbital electron populations 1.21726 0.94931 1.01632 1.01253 1.20248 0.96045 0.91951 1.01582 1.19517 1.10561 0.97671 0.92178 1.20621 1.00037 0.94215 0.96883 1.20204 1.10697 0.95516 0.95537 1.20355 1.00109 0.99390 0.93614 1.17863 0.89973 0.93468 0.91592 1.19748 1.34969 0.97628 1.00104 0.90614 1.26725 0.92634 1.04522 0.94313 1.69893 1.28887 1.38589 1.08485 0.85322 0.79323 0.76864 0.78598 1.18706 1.19397 1.18392 1.21240 1.05688 0.95518 0.98220 1.19781 0.99571 0.94247 0.95357 1.20705 1.01168 0.99759 0.93880 0.93719 0.90930 0.93466 0.91827 0.91740 0.87051 0.93011 0.93417 0.92133 0.90575 0.88393 0.92140 0.93181 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.69 71.98 0.70 -3.20 16 2 C -0.06 -2.00 5.36 29.85 0.16 -1.84 16 3 C -0.20 -8.54 5.16 -19.67 -0.10 -8.64 16 4 C -0.10 -4.47 9.30 22.22 0.21 -4.26 16 5 C -0.22 -10.86 5.94 -19.41 -0.12 -10.97 16 6 C -0.08 -3.30 9.41 71.24 0.67 -2.63 16 7 C 0.07 4.07 5.57 -21.29 -0.12 3.95 16 8 C -0.49 -27.32 8.15 23.46 0.19 -27.13 16 9 H 0.08 4.02 6.86 -2.91 -0.02 4.00 16 10 C 0.03 1.64 5.19 85.26 0.44 2.08 16 11 N -0.83 -45.12 10.87 21.83 0.24 -44.88 16 12 Si 0.98 39.60 29.59 68.60 2.03 41.62 16 13 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 14 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 15 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 16 C -0.19 -10.20 8.33 22.73 0.19 -10.01 16 17 C -0.09 -4.19 5.87 -19.92 -0.12 -4.30 16 18 C -0.10 -3.71 9.20 71.24 0.66 -3.06 16 19 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 20 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 21 H 0.05 1.37 6.89 -2.39 -0.02 1.36 16 22 H 0.06 1.91 8.05 -2.38 -0.02 1.89 16 23 H 0.06 1.98 6.97 -2.39 -0.02 1.96 16 24 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 2.10 6.77 -2.39 -0.02 2.08 16 27 H 0.06 2.21 8.09 -2.39 -0.02 2.19 16 28 H 0.28 14.03 8.30 -92.70 -0.77 13.26 16 29 H 0.10 5.63 6.13 -2.91 -0.02 5.62 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 32 H 0.08 2.54 5.38 -2.39 -0.01 2.53 16 Total: -1.00 -60.14 261.07 6.12 -54.02 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 1.09 Total: 19.25 kcal Atomic # 6 Polarization: -72.77 SS G_CDS: 2.76 Total: -70.01 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.24 Total: -44.88 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.62 kcal Total: -60.14 6.12 -54.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575695269.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.074 kcal (2) G-P(sol) polarization free energy of solvation -60.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds