Wall clock time and date at job start Mon Mar 30 2020 01:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47301 * 2 1 4 4 C 1.38655 * 119.87378 * 265.00290 * 3 2 1 5 5 C 1.38617 * 120.49957 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.87547 * 180.02562 * 5 4 3 7 7 C 1.37643 * 120.24642 * 0.02562 * 5 4 3 8 8 C 1.40698 * 119.74283 * 0.02562 * 7 5 4 9 9 C 1.41401 * 120.23799 * 179.97438 * 8 7 5 10 10 H 1.08004 * 119.99228 * 154.51997 * 9 8 7 11 11 C 1.39939 * 120.00084 * 334.52284 * 9 8 7 12 12 N 1.30816 * 120.00493 * 334.59788 * 11 9 8 13 13 Si 1.86811 * 119.99635 * 154.59763 * 11 9 8 14 14 H 1.48501 * 109.46935 * 179.97438 * 13 11 9 15 15 H 1.48498 * 109.46994 * 299.99707 * 13 11 9 16 16 H 1.48497 * 109.47007 * 60.00216 * 13 11 9 17 17 C 1.37598 * 119.87524 * 85.30787 * 3 2 1 18 18 C 1.50703 * 120.12781 * 359.97438 * 17 3 2 19 19 H 1.08998 * 109.47603 * 180.02562 * 1 2 3 20 20 H 1.09008 * 109.46895 * 299.99582 * 1 2 3 21 21 H 1.09000 * 109.47698 * 59.99328 * 1 2 3 22 22 H 1.09004 * 109.46429 * 240.00507 * 2 1 3 23 23 H 1.08996 * 109.47227 * 120.00573 * 2 1 3 24 24 H 1.07995 * 119.75123 * 0.02562 * 4 3 2 25 25 H 1.09000 * 109.47547 * 269.97611 * 6 5 4 26 26 H 1.09000 * 109.47045 * 29.98121 * 6 5 4 27 27 H 1.09005 * 109.46742 * 149.98051 * 6 5 4 28 28 H 1.07993 * 120.12530 * 179.97438 * 7 5 4 29 29 H 0.97005 * 119.99460 * 354.16516 * 12 11 9 30 30 H 1.08998 * 109.46783 * 270.32463 * 18 17 3 31 31 H 1.08996 * 109.46877 * 30.32342 * 18 17 3 32 32 H 1.08994 * 109.46787 * 150.32443 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0370 -1.1977 5 6 2.8241 3.3436 -1.2129 6 6 3.1770 3.9998 -2.5228 7 6 2.9626 4.0438 -0.0360 8 6 2.6328 3.4281 1.1854 9 6 2.7715 4.1375 2.4007 10 1 2.1690 3.8672 3.2554 11 6 3.6892 5.1896 2.4960 12 7 4.7332 5.2203 1.7084 13 14 3.4234 6.5504 3.7480 14 1 4.5285 7.5374 3.6485 15 1 2.1293 7.2265 3.4769 16 1 3.4014 5.9687 5.1141 17 6 2.1688 2.0995 1.1891 18 6 1.8164 1.4250 2.4899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.8932 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 2.2554 1.4953 -2.1260 25 1 4.2276 3.8175 -2.7492 26 1 2.5567 3.5834 -3.3165 27 1 3.0020 5.0733 -2.4501 28 1 3.3237 5.0614 -0.0500 29 1 4.9173 4.4731 1.1178 30 1 0.7646 1.5994 2.7162 31 1 1.9969 0.3535 2.4040 32 1 2.4330 1.8343 3.2900 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575696183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:27 Heat of formation + Delta-G solvation = -19.412159 kcal Electronic energy + Delta-G solvation = -13111.717284 eV Core-core repulsion = 11035.348842 eV Total energy + Delta-G solvation = -2076.368443 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.35507 -34.52345 -33.53633 -31.42927 -28.37983 -28.08146 -25.36385 -23.74305 -22.74563 -20.42722 -18.62549 -17.27158 -15.10501 -14.41895 -14.13284 -13.89696 -13.25135 -13.06251 -12.65582 -12.33198 -12.10292 -11.85874 -11.66397 -11.49839 -11.20367 -10.97808 -10.85797 -10.47050 -10.40521 -10.28311 -10.03213 -9.39582 -9.26793 -8.86666 -7.40960 -7.30241 -6.96387 -4.35945 2.81391 2.84833 3.18312 3.30277 3.38707 4.06342 4.58168 5.43610 5.57706 5.60307 5.95734 6.01414 6.03894 6.17501 6.33261 6.34010 6.38094 6.43640 6.44213 6.60494 6.63548 6.68814 6.75457 6.98295 7.08189 7.37569 7.51520 7.79915 7.90384 7.96804 8.03868 8.28559 8.40617 8.85721 8.98998 10.12821 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.032755 B = 0.011693 C = 0.009133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.631689 B = 2393.949184 C = 3065.126602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 C -0.049 4.049 4 C -0.243 4.243 5 C -0.062 4.062 6 C -0.103 4.103 7 C -0.218 4.218 8 C 0.102 3.898 9 C -0.523 4.523 10 H 0.076 0.924 11 C 0.039 3.961 12 N -0.800 5.800 13 Si 1.062 2.938 14 H -0.275 1.275 15 H -0.275 1.275 16 H -0.277 1.277 17 C -0.197 4.197 18 C -0.084 4.084 19 H 0.044 0.956 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.299 0.701 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 -3.571 -1.294 5.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 C -0.049 4.049 4 C -0.263 4.263 5 C -0.063 4.063 6 C -0.160 4.160 7 C -0.237 4.237 8 C 0.100 3.900 9 C -0.551 4.551 10 H 0.094 0.906 11 C -0.182 4.182 12 N -0.424 5.424 13 Si 0.886 3.114 14 H -0.200 1.200 15 H -0.201 1.201 16 H -0.202 1.202 17 C -0.198 4.198 18 C -0.141 4.141 19 H 0.063 0.937 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.904 -2.125 -0.780 3.682 hybrid contribution -0.596 -1.442 -0.669 1.698 sum -3.499 -3.567 -1.449 5.203 Atomic orbital electron populations 1.21673 0.95897 1.00122 1.02025 1.20471 0.95365 0.94918 1.01016 1.19169 0.98542 0.94018 0.93208 1.20024 1.14632 0.96000 0.95600 1.19415 0.98558 0.94259 0.94036 1.20666 1.00305 0.99699 0.95342 1.21002 1.11722 0.99420 0.91605 1.17498 0.89561 0.90109 0.92855 1.20496 1.21291 1.14947 0.98374 0.90626 1.26942 0.91931 0.99945 0.99413 1.70438 1.21615 1.33365 1.16984 0.83686 0.77220 0.75407 0.75077 1.19967 1.20099 1.20226 1.19505 1.12631 0.94610 0.93064 1.20430 0.99477 0.97836 0.96353 0.93684 0.92672 0.93044 0.92731 0.91842 0.89574 0.92657 0.93142 0.92829 0.87820 0.88761 0.94192 0.94011 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 37.16 0.37 -1.88 16 2 C -0.08 -1.46 5.56 -27.88 -0.16 -1.61 16 3 C -0.05 -1.11 5.13 -104.70 -0.54 -1.65 16 4 C -0.24 -5.55 9.33 -39.29 -0.37 -5.91 16 5 C -0.06 -1.47 5.87 -104.70 -0.61 -2.09 16 6 C -0.10 -1.99 10.00 36.00 0.36 -1.63 16 7 C -0.22 -5.71 7.59 -38.87 -0.30 -6.01 16 8 C 0.10 2.75 5.30 -106.83 -0.57 2.18 16 9 C -0.52 -13.98 8.06 -37.74 -0.30 -14.29 16 10 H 0.08 1.97 6.94 -52.48 -0.36 1.60 16 11 C 0.04 1.01 4.94 -17.35 -0.09 0.92 16 12 N -0.80 -21.64 12.32 55.55 0.68 -20.96 16 13 Si 1.06 21.96 30.00 -169.99 -5.10 16.86 16 14 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 15 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 17 C -0.20 -4.81 5.94 -103.92 -0.62 -5.43 16 18 C -0.08 -1.80 8.78 36.01 0.32 -1.48 16 19 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 20 H 0.05 0.92 7.94 -51.92 -0.41 0.51 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.92 8.05 -51.93 -0.42 0.50 16 23 H 0.06 1.11 6.14 -51.93 -0.32 0.79 16 24 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 27 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 28 H 0.10 2.81 6.49 -52.49 -0.34 2.47 16 29 H 0.30 8.34 6.69 -40.82 -0.27 8.07 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.79 6.02 -51.93 -0.31 0.47 16 32 H 0.06 1.28 6.77 -51.93 -0.35 0.93 16 LS Contribution 261.86 15.07 3.95 3.95 Total: -1.00 -27.66 261.86 -7.51 -35.16 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.54 Total: 3.86 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: -2.50 Total: -38.87 kcal Atomic # 7 Polarization: -21.64 SS G_CDS: 0.68 Total: -20.96 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.10 Total: 16.86 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.66 -7.51 -35.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575696183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.752 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds