Wall clock time and date at job start Mon Mar 30 2020 01:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47301 * 2 1 4 4 C 1.38655 * 119.87378 * 265.00290 * 3 2 1 5 5 C 1.38617 * 120.49957 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.87547 * 180.02562 * 5 4 3 7 7 C 1.37643 * 120.24642 * 0.02562 * 5 4 3 8 8 C 1.40698 * 119.74283 * 0.02562 * 7 5 4 9 9 C 1.41401 * 120.23799 * 179.97438 * 8 7 5 10 10 H 1.08004 * 119.99228 * 154.51997 * 9 8 7 11 11 C 1.39939 * 120.00084 * 334.52284 * 9 8 7 12 12 N 1.30816 * 120.00493 * 334.59788 * 11 9 8 13 13 Si 1.86811 * 119.99635 * 154.59763 * 11 9 8 14 14 H 1.48501 * 109.46935 * 179.97438 * 13 11 9 15 15 H 1.48498 * 109.46994 * 299.99707 * 13 11 9 16 16 H 1.48497 * 109.47007 * 60.00216 * 13 11 9 17 17 C 1.37598 * 119.87524 * 85.30787 * 3 2 1 18 18 C 1.50703 * 120.12781 * 359.97438 * 17 3 2 19 19 H 1.08998 * 109.47603 * 180.02562 * 1 2 3 20 20 H 1.09008 * 109.46895 * 299.99582 * 1 2 3 21 21 H 1.09000 * 109.47698 * 59.99328 * 1 2 3 22 22 H 1.09004 * 109.46429 * 240.00507 * 2 1 3 23 23 H 1.08996 * 109.47227 * 120.00573 * 2 1 3 24 24 H 1.07995 * 119.75123 * 0.02562 * 4 3 2 25 25 H 1.09000 * 109.47547 * 269.97611 * 6 5 4 26 26 H 1.09000 * 109.47045 * 29.98121 * 6 5 4 27 27 H 1.09005 * 109.46742 * 149.98051 * 6 5 4 28 28 H 1.07993 * 120.12530 * 179.97438 * 7 5 4 29 29 H 0.97005 * 119.99460 * 354.16516 * 12 11 9 30 30 H 1.08998 * 109.46783 * 270.32463 * 18 17 3 31 31 H 1.08996 * 109.46877 * 30.32342 * 18 17 3 32 32 H 1.08994 * 109.46787 * 150.32443 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0370 -1.1977 5 6 2.8241 3.3436 -1.2129 6 6 3.1770 3.9998 -2.5228 7 6 2.9626 4.0438 -0.0360 8 6 2.6328 3.4281 1.1854 9 6 2.7715 4.1375 2.4007 10 1 2.1690 3.8672 3.2554 11 6 3.6892 5.1896 2.4960 12 7 4.7332 5.2203 1.7084 13 14 3.4234 6.5504 3.7480 14 1 4.5285 7.5374 3.6485 15 1 2.1293 7.2265 3.4769 16 1 3.4014 5.9687 5.1141 17 6 2.1688 2.0995 1.1891 18 6 1.8164 1.4250 2.4899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.8932 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 2.2554 1.4953 -2.1260 25 1 4.2276 3.8175 -2.7492 26 1 2.5567 3.5834 -3.3165 27 1 3.0020 5.0733 -2.4501 28 1 3.3237 5.0614 -0.0500 29 1 4.9173 4.4731 1.1178 30 1 0.7646 1.5994 2.7162 31 1 1.9969 0.3535 2.4040 32 1 2.4330 1.8343 3.2900 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575696183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:27 Heat of formation + Delta-G solvation = -32.657166 kcal Electronic energy + Delta-G solvation = -13112.291631 eV Core-core repulsion = 11035.348842 eV Total energy + Delta-G solvation = -2076.942789 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.17446 -36.32123 -35.26921 -33.15442 -30.04082 -29.81065 -27.29106 -25.42110 -24.33431 -22.27061 -20.37699 -19.18388 -16.84966 -16.21721 -15.90871 -15.53284 -14.82627 -14.72694 -14.21898 -13.97487 -13.88089 -13.46620 -13.29537 -13.11933 -12.85902 -12.54814 -12.52399 -12.21966 -12.00512 -11.78018 -11.73513 -11.13749 -11.09612 -10.76778 -9.34845 -9.24814 -8.85100 -6.38401 0.94748 0.98268 1.48851 1.63626 1.77718 2.33892 2.69069 3.53429 4.09316 4.18572 4.37583 4.52730 4.56791 4.58862 4.62074 4.80919 4.84173 4.90588 4.97651 5.00395 5.07238 5.11249 5.19641 5.24948 5.42818 5.49382 5.58455 5.89819 5.93317 6.08112 6.15376 6.36210 6.51759 6.90897 7.05356 8.09063 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.032755 B = 0.011693 C = 0.009133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.631689 B = 2393.949184 C = 3065.126602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 C -0.054 4.054 4 C -0.245 4.245 5 C -0.073 4.073 6 C -0.099 4.099 7 C -0.246 4.246 8 C 0.070 3.930 9 C -0.554 4.554 10 H 0.073 0.927 11 C 0.001 3.999 12 N -0.824 5.824 13 Si 1.113 2.887 14 H -0.273 1.273 15 H -0.266 1.266 16 H -0.257 1.257 17 C -0.218 4.218 18 C -0.077 4.077 19 H 0.078 0.922 20 H 0.043 0.957 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.281 0.719 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 -4.915 -1.796 6.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 C -0.054 4.054 4 C -0.264 4.264 5 C -0.073 4.073 6 C -0.156 4.156 7 C -0.266 4.266 8 C 0.068 3.932 9 C -0.582 4.582 10 H 0.091 0.909 11 C -0.214 4.214 12 N -0.447 5.447 13 Si 0.931 3.069 14 H -0.197 1.197 15 H -0.191 1.191 16 H -0.181 1.181 17 C -0.219 4.219 18 C -0.133 4.133 19 H 0.097 0.903 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.132 0.868 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.942 -3.492 -1.292 5.423 hybrid contribution -0.322 -1.166 -0.643 1.370 sum -4.264 -4.659 -1.935 6.605 Atomic orbital electron populations 1.21634 0.94116 1.02136 1.01347 1.20541 0.96775 0.91886 1.02366 1.19724 0.97058 0.96247 0.92373 1.20485 1.13152 0.95732 0.97007 1.19904 0.97568 0.94892 0.94945 1.20684 1.01505 0.99536 0.93878 1.20986 1.13679 0.99003 0.92891 1.17928 0.90490 0.91578 0.93239 1.20667 1.22308 1.16624 0.98637 0.90931 1.28348 0.90907 1.01798 1.00335 1.70557 1.22912 1.32926 1.18344 0.83064 0.77394 0.72826 0.73661 1.19741 1.19112 1.18114 1.19957 1.12465 0.94184 0.95293 1.20383 0.99643 0.98944 0.94354 0.90337 0.93768 0.93362 0.90887 0.90998 0.86772 0.91510 0.90404 0.92882 0.90063 0.90705 0.93192 0.91441 0.93966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.89 71.98 0.71 -3.13 16 2 C -0.08 -2.58 5.56 29.85 0.17 -2.41 16 3 C -0.05 -2.34 5.13 -19.92 -0.10 -2.44 16 4 C -0.24 -10.69 9.33 22.46 0.21 -10.48 16 5 C -0.07 -3.42 5.87 -19.92 -0.12 -3.53 16 6 C -0.10 -3.70 10.00 71.24 0.71 -2.99 16 7 C -0.25 -13.31 7.59 22.73 0.17 -13.14 16 8 C 0.07 3.87 5.30 -21.29 -0.11 3.76 16 9 C -0.55 -30.67 8.06 23.46 0.19 -30.49 16 10 H 0.07 3.91 6.94 -2.91 -0.02 3.89 16 11 C 0.00 0.07 4.94 85.26 0.42 0.49 16 12 N -0.82 -46.41 12.32 21.82 0.27 -46.14 16 13 Si 1.11 44.91 30.00 68.60 2.06 46.96 16 14 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 15 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 16 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 17 C -0.22 -10.63 5.94 -19.41 -0.12 -10.74 16 18 C -0.08 -3.21 8.78 71.24 0.63 -2.58 16 19 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.04 1.34 7.94 -2.38 -0.02 1.33 16 21 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.07 2.14 8.05 -2.38 -0.02 2.12 16 23 H 0.07 2.24 6.14 -2.39 -0.01 2.23 16 24 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 25 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 27 H 0.05 1.95 8.08 -2.38 -0.02 1.93 16 28 H 0.08 4.65 6.49 -2.91 -0.02 4.63 16 29 H 0.28 16.57 6.69 -92.70 -0.62 15.95 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 2.41 6.02 -2.39 -0.01 2.39 16 32 H 0.04 1.86 6.77 -2.39 -0.02 1.85 16 Total: -1.00 -61.23 261.86 6.33 -54.90 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 1.24 Total: 21.96 kcal Atomic # 6 Polarization: -80.45 SS G_CDS: 2.76 Total: -77.69 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.27 Total: -46.14 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.06 Total: 46.96 kcal Total: -61.23 6.33 -54.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575696183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.247 kcal (2) G-P(sol) polarization free energy of solvation -61.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds