Wall clock time and date at job start Mon Mar 30 2020 01:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47058 * 2 1 4 4 C 1.37633 * 120.12928 * 264.97751 * 3 2 1 5 5 C 1.38620 * 120.24909 * 180.02562 * 4 3 2 6 6 C 1.50695 * 119.74866 * 179.97438 * 5 4 3 7 7 C 1.38658 * 120.49854 * 0.02604 * 5 4 3 8 8 C 1.37594 * 120.24817 * 359.67066 * 7 5 4 9 9 C 1.50698 * 120.12677 * 180.32489 * 8 7 5 10 10 C 1.40700 * 120.12711 * 84.99631 * 3 2 1 11 11 C 1.41393 * 120.24276 * 359.97438 * 10 3 2 12 12 H 1.07997 * 120.00226 * 312.29119 * 11 10 3 13 13 C 1.39950 * 119.99936 * 132.01363 * 11 10 3 14 14 N 1.30826 * 119.99982 * 341.63296 * 13 11 10 15 15 Si 1.86807 * 119.99876 * 161.62637 * 13 11 10 16 16 H 1.48493 * 109.46867 * 60.00463 * 15 13 11 17 17 H 1.48506 * 109.46683 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47182 * 300.00219 * 15 13 11 19 19 H 1.08998 * 109.46978 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47351 * 300.00067 * 1 2 3 21 21 H 1.09003 * 109.46671 * 60.00378 * 1 2 3 22 22 H 1.08999 * 109.47351 * 239.99933 * 2 1 3 23 23 H 1.08997 * 109.46816 * 120.00010 * 2 1 3 24 24 H 1.08000 * 119.87577 * 0.02562 * 4 3 2 25 25 H 1.09006 * 109.46849 * 90.00146 * 6 5 4 26 26 H 1.08994 * 109.47338 * 210.00321 * 6 5 4 27 27 H 1.08999 * 109.47234 * 330.00817 * 6 5 4 28 28 H 1.08003 * 119.87123 * 179.97438 * 7 5 4 29 29 H 1.08996 * 109.47570 * 271.45801 * 9 8 7 30 30 H 1.09010 * 109.47147 * 31.45752 * 9 8 7 31 31 H 1.09001 * 109.47584 * 151.44904 * 9 8 7 32 32 H 0.97001 * 119.99629 * 185.16352 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0374 -1.1858 5 6 2.8237 3.3441 -1.1887 6 6 3.1807 4.0081 -2.4935 7 6 2.9616 4.0444 0.0001 8 6 2.6332 3.4500 1.1968 9 6 2.7773 4.2161 2.4865 10 6 2.1677 2.1220 1.2123 11 6 1.8331 1.4988 2.4366 12 1 0.8987 0.9661 2.5337 13 6 2.7154 1.5675 3.5208 14 7 3.9712 1.8767 3.3236 15 14 2.0998 1.2179 5.2495 16 1 1.5606 -0.1642 5.3128 17 1 3.2222 1.3565 6.2120 18 1 1.0273 2.1841 5.5979 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.2577 1.5012 -2.1176 25 1 2.3016 4.5098 -2.8983 26 1 3.9710 4.7394 -2.3247 27 1 3.5274 3.2552 -3.2014 28 1 3.3235 5.0619 -0.0138 29 1 3.7849 4.0803 2.8793 30 1 2.5991 5.2755 2.3017 31 1 2.0518 3.8469 3.2115 32 1 4.5987 1.8513 4.0629 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575696818.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:58 Heat of formation + Delta-G solvation = -10.037371 kcal Electronic energy + Delta-G solvation = -13256.043016 eV Core-core repulsion = 11180.081095 eV Total energy + Delta-G solvation = -2075.961921 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.18193 -34.01065 -33.40399 -31.25728 -28.93656 -27.35721 -25.79954 -23.69216 -22.54261 -19.43613 -18.87077 -17.02852 -15.21197 -14.43922 -14.10082 -13.59493 -12.90230 -12.78976 -12.49084 -12.33497 -11.99842 -11.67247 -11.59428 -11.29719 -11.07029 -11.04676 -10.75582 -10.68594 -10.34631 -10.02432 -9.83511 -9.45348 -9.19759 -8.73088 -7.16176 -6.85311 -6.53657 -4.28890 2.84804 2.95413 3.14296 3.17481 3.20916 4.06650 4.73764 5.41828 5.88260 5.96921 6.04008 6.11211 6.30371 6.35084 6.39324 6.45818 6.52314 6.56369 6.66790 6.80874 6.97412 7.05765 7.10241 7.13945 7.26548 7.34469 7.46482 7.81515 7.96040 7.99304 8.19858 8.36871 8.67447 8.99459 9.07293 10.43543 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.031664 B = 0.013426 C = 0.010239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.084611 B = 2084.936472 C = 2733.922488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 C -0.156 4.156 4 C -0.105 4.105 5 C -0.189 4.189 6 C -0.088 4.088 7 C -0.107 4.107 8 C -0.123 4.123 9 C -0.083 4.083 10 C 0.123 3.877 11 C -0.483 4.483 12 H 0.078 0.922 13 C 0.084 3.916 14 N -0.808 5.808 15 Si 0.892 3.108 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.266 1.266 19 H 0.039 0.961 20 H 0.057 0.943 21 H 0.042 0.958 22 H 0.041 0.959 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.021 0.979 31 H 0.057 0.943 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 0.416 -2.738 3.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 C -0.157 4.157 4 C -0.123 4.123 5 C -0.189 4.189 6 C -0.145 4.145 7 C -0.126 4.126 8 C -0.124 4.124 9 C -0.139 4.139 10 C 0.121 3.879 11 C -0.514 4.514 12 H 0.095 0.905 13 C -0.131 4.131 14 N -0.436 5.436 15 Si 0.717 3.283 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.191 1.191 19 H 0.058 0.942 20 H 0.076 0.924 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.057 0.503 -2.602 3.355 hybrid contribution -0.073 -0.171 0.842 0.863 sum -2.130 0.333 -1.760 2.783 Atomic orbital electron populations 1.21709 0.96889 0.99624 1.01476 1.20132 0.94389 0.94484 1.00695 1.19974 1.07163 0.95188 0.93418 1.20337 1.01646 0.94293 0.96074 1.19243 1.10166 0.95692 0.93841 1.20463 0.99541 0.99120 0.95408 1.20395 1.01921 0.97827 0.92423 1.19937 1.04769 0.94535 0.93175 1.20569 1.02200 0.95024 0.96130 1.17241 0.88895 0.89912 0.91848 1.19193 1.05074 1.32296 0.94818 0.90455 1.25623 0.94399 0.93238 0.99823 1.69795 1.02669 1.37531 1.33561 0.86639 0.79344 0.79731 0.82554 1.19370 1.20640 1.19093 0.94237 0.92405 0.93915 0.93985 0.91111 0.89423 0.93636 0.93457 0.93489 0.89420 0.91605 0.95992 0.92398 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.88 37.16 0.37 -2.22 16 2 C -0.06 -1.26 5.55 -27.88 -0.15 -1.41 16 3 C -0.16 -3.77 5.19 -103.91 -0.54 -4.31 16 4 C -0.11 -2.39 9.30 -39.66 -0.37 -2.76 16 5 C -0.19 -4.19 5.90 -104.33 -0.62 -4.80 16 6 C -0.09 -1.57 10.00 36.00 0.36 -1.21 16 7 C -0.11 -2.52 9.33 -39.66 -0.37 -2.89 16 8 C -0.12 -3.12 5.58 -103.92 -0.58 -3.70 16 9 C -0.08 -1.96 8.30 36.00 0.30 -1.66 16 10 C 0.12 3.21 5.20 -106.83 -0.56 2.65 16 11 C -0.48 -12.52 6.87 -37.74 -0.26 -12.78 16 12 H 0.08 1.96 6.79 -52.49 -0.36 1.60 16 13 C 0.08 2.11 3.53 -17.34 -0.06 2.05 16 14 N -0.81 -21.12 10.84 55.55 0.60 -20.52 16 15 Si 0.89 19.05 29.60 -169.99 -5.03 14.02 16 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.06 1.13 7.09 -51.93 -0.37 0.77 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 23 H 0.07 1.58 7.31 -51.93 -0.38 1.20 16 24 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 27 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 29 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 30 H 0.02 0.45 8.10 -51.92 -0.42 0.03 16 31 H 0.06 1.40 6.34 -51.93 -0.33 1.07 16 32 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 LS Contribution 261.85 15.07 3.95 3.95 Total: -1.00 -26.90 261.85 -7.67 -34.58 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.71 Total: 1.00 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: -2.48 Total: -33.03 kcal Atomic # 7 Polarization: -21.12 SS G_CDS: 0.60 Total: -20.52 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.90 -7.67 -34.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575696818.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.539 kcal (2) G-P(sol) polarization free energy of solvation -26.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds