Wall clock time and date at job start Mon Mar 30 2020 01:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47058 * 2 1 4 4 C 1.37633 * 120.12928 * 264.97751 * 3 2 1 5 5 C 1.38620 * 120.24909 * 180.02562 * 4 3 2 6 6 C 1.50695 * 119.74866 * 179.97438 * 5 4 3 7 7 C 1.38658 * 120.49854 * 0.02604 * 5 4 3 8 8 C 1.37594 * 120.24817 * 359.67066 * 7 5 4 9 9 C 1.50698 * 120.12677 * 180.32489 * 8 7 5 10 10 C 1.40700 * 120.12711 * 84.99631 * 3 2 1 11 11 C 1.41393 * 120.24276 * 359.97438 * 10 3 2 12 12 H 1.07997 * 120.00226 * 312.29119 * 11 10 3 13 13 C 1.39950 * 119.99936 * 132.01363 * 11 10 3 14 14 N 1.30826 * 119.99982 * 341.63296 * 13 11 10 15 15 Si 1.86807 * 119.99876 * 161.62637 * 13 11 10 16 16 H 1.48493 * 109.46867 * 60.00463 * 15 13 11 17 17 H 1.48506 * 109.46683 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47182 * 300.00219 * 15 13 11 19 19 H 1.08998 * 109.46978 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47351 * 300.00067 * 1 2 3 21 21 H 1.09003 * 109.46671 * 60.00378 * 1 2 3 22 22 H 1.08999 * 109.47351 * 239.99933 * 2 1 3 23 23 H 1.08997 * 109.46816 * 120.00010 * 2 1 3 24 24 H 1.08000 * 119.87577 * 0.02562 * 4 3 2 25 25 H 1.09006 * 109.46849 * 90.00146 * 6 5 4 26 26 H 1.08994 * 109.47338 * 210.00321 * 6 5 4 27 27 H 1.08999 * 109.47234 * 330.00817 * 6 5 4 28 28 H 1.08003 * 119.87123 * 179.97438 * 7 5 4 29 29 H 1.08996 * 109.47570 * 271.45801 * 9 8 7 30 30 H 1.09010 * 109.47147 * 31.45752 * 9 8 7 31 31 H 1.09001 * 109.47584 * 151.44904 * 9 8 7 32 32 H 0.97001 * 119.99629 * 185.16352 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0374 -1.1858 5 6 2.8237 3.3441 -1.1887 6 6 3.1807 4.0081 -2.4935 7 6 2.9616 4.0444 0.0001 8 6 2.6332 3.4500 1.1968 9 6 2.7773 4.2161 2.4865 10 6 2.1677 2.1220 1.2123 11 6 1.8331 1.4988 2.4366 12 1 0.8987 0.9661 2.5337 13 6 2.7154 1.5675 3.5208 14 7 3.9712 1.8767 3.3236 15 14 2.0998 1.2179 5.2495 16 1 1.5606 -0.1642 5.3128 17 1 3.2222 1.3565 6.2120 18 1 1.0273 2.1841 5.5979 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.2577 1.5012 -2.1176 25 1 2.3016 4.5098 -2.8983 26 1 3.9710 4.7394 -2.3247 27 1 3.5274 3.2552 -3.2014 28 1 3.3235 5.0619 -0.0138 29 1 3.7849 4.0803 2.8793 30 1 2.5991 5.2755 2.3017 31 1 2.0518 3.8469 3.2115 32 1 4.5987 1.8513 4.0629 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575696818.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:58 Heat of formation + Delta-G solvation = -22.344551 kcal Electronic energy + Delta-G solvation = -13256.576696 eV Core-core repulsion = 11180.081095 eV Total energy + Delta-G solvation = -2076.495601 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.97170 -35.82443 -35.10355 -33.05330 -30.62738 -29.09774 -27.59116 -25.43866 -24.23489 -21.23506 -20.62257 -18.90202 -17.03986 -16.21904 -15.84749 -15.26779 -14.55568 -14.39832 -14.22655 -13.93194 -13.73245 -13.32853 -13.25803 -13.06812 -12.75159 -12.67965 -12.49986 -12.36795 -12.07245 -11.68886 -11.57070 -11.21011 -10.96338 -10.60252 -8.98016 -8.71379 -8.40175 -6.22739 1.04486 1.12146 1.40278 1.47527 1.49355 2.28714 2.87183 3.57182 4.29702 4.32777 4.46744 4.56866 4.72314 4.75676 4.78767 4.83146 4.98702 5.03856 5.09968 5.17063 5.20760 5.30449 5.34692 5.38947 5.51528 5.53147 5.64933 5.98124 6.15148 6.20576 6.30412 6.54676 6.79295 7.10945 7.18376 8.57713 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.031664 B = 0.013426 C = 0.010239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.084611 B = 2084.936472 C = 2733.922488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 C -0.171 4.171 4 C -0.119 4.119 5 C -0.186 4.186 6 C -0.086 4.086 7 C -0.124 4.124 8 C -0.150 4.150 9 C -0.073 4.073 10 C 0.086 3.914 11 C -0.504 4.504 12 H 0.071 0.929 13 C 0.050 3.950 14 N -0.842 5.842 15 Si 0.952 3.048 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.264 1.264 19 H 0.067 0.933 20 H 0.038 0.962 21 H 0.051 0.949 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.114 0.886 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 0.483 -3.867 4.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.096 4.096 3 C -0.172 4.172 4 C -0.137 4.137 5 C -0.187 4.187 6 C -0.142 4.142 7 C -0.143 4.143 8 C -0.151 4.151 9 C -0.129 4.129 10 C 0.084 3.916 11 C -0.535 4.535 12 H 0.089 0.911 13 C -0.162 4.162 14 N -0.471 5.471 15 Si 0.775 3.225 16 H -0.189 1.189 17 H -0.200 1.200 18 H -0.189 1.189 19 H 0.086 0.914 20 H 0.057 0.943 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.132 0.868 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.460 0.571 -3.742 4.515 hybrid contribution 0.057 -0.166 1.044 1.058 sum -2.402 0.405 -2.699 3.636 Atomic orbital electron populations 1.21615 0.94928 1.01319 1.00944 1.20144 0.96083 0.92832 1.00528 1.20423 1.06653 0.96585 0.93493 1.20698 1.01443 0.94898 0.96623 1.19827 1.07801 0.95591 0.95435 1.20504 1.00801 0.99697 0.93246 1.20699 1.02223 0.98898 0.92431 1.20275 1.05532 0.94886 0.94429 1.20440 1.00926 0.96125 0.95413 1.17604 0.90438 0.90710 0.92825 1.19299 1.05174 1.33228 0.95845 0.91097 1.26228 0.94219 0.92855 1.02876 1.69860 1.03604 1.39060 1.34566 0.85717 0.78861 0.79602 0.78352 1.18905 1.19961 1.18892 0.91427 0.94330 0.92964 0.91996 0.93283 0.86828 0.91752 0.92268 0.91815 0.87636 0.92912 0.93798 0.93730 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.88 71.98 0.71 -3.95 16 2 C -0.06 -2.42 5.55 29.85 0.17 -2.26 16 3 C -0.17 -8.17 5.19 -19.41 -0.10 -8.27 16 4 C -0.12 -5.17 9.30 22.22 0.21 -4.96 16 5 C -0.19 -7.86 5.90 -19.67 -0.12 -7.98 16 6 C -0.09 -2.73 10.00 71.23 0.71 -2.02 16 7 C -0.12 -5.72 9.33 22.22 0.21 -5.51 16 8 C -0.15 -7.67 5.58 -19.41 -0.11 -7.78 16 9 C -0.07 -3.48 8.30 71.24 0.59 -2.89 16 10 C 0.09 4.55 5.20 -21.29 -0.11 4.44 16 11 C -0.50 -26.81 6.87 23.46 0.16 -26.65 16 12 H 0.07 3.72 6.79 -2.91 -0.02 3.70 16 13 C 0.05 2.55 3.53 85.26 0.30 2.85 16 14 N -0.84 -45.00 10.84 21.83 0.24 -44.76 16 15 Si 0.95 39.61 29.60 68.60 2.03 41.64 16 16 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 20 H 0.04 1.50 7.09 -2.39 -0.02 1.48 16 21 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.06 2.26 8.05 -2.39 -0.02 2.24 16 23 H 0.05 2.21 7.31 -2.39 -0.02 2.20 16 24 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 25 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 27 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 28 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 29 H 0.05 2.64 6.76 -2.39 -0.02 2.62 16 30 H 0.04 1.82 8.10 -2.38 -0.02 1.80 16 31 H 0.04 2.19 6.34 -2.39 -0.02 2.18 16 32 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 Total: -1.00 -57.60 261.85 5.97 -51.63 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.08 Total: 16.48 kcal Atomic # 6 Polarization: -67.60 SS G_CDS: 2.62 Total: -64.98 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.24 Total: -44.76 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -57.60 5.97 -51.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575696818.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.282 kcal (2) G-P(sol) polarization free energy of solvation -57.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds