Wall clock time and date at job start Mon Mar 30 2020 01:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.37644 * 120.12978 * 269.98338 * 3 2 1 5 5 C 1.50708 * 119.87349 * 0.03948 * 4 3 2 6 6 C 1.38613 * 120.25173 * 180.02562 * 4 3 2 7 7 C 1.38658 * 120.50026 * 0.02562 * 6 4 3 8 8 C 1.50701 * 119.87453 * 180.02562 * 7 6 4 9 9 C 1.37597 * 120.24467 * 0.02562 * 7 6 4 10 10 C 1.40698 * 120.12962 * 90.00210 * 3 2 1 11 11 C 1.41390 * 120.24228 * 359.97438 * 10 3 2 12 12 H 1.07998 * 120.00280 * 334.05277 * 11 10 3 13 13 C 1.39945 * 119.99804 * 154.04561 * 11 10 3 14 14 N 1.30826 * 120.00259 * 343.60810 * 13 11 10 15 15 Si 1.86806 * 119.99911 * 163.60579 * 13 11 10 16 16 H 1.48501 * 109.46904 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47094 * 120.00303 * 15 13 11 18 18 H 1.48500 * 109.46961 * 240.00232 * 15 13 11 19 19 H 1.09010 * 109.46694 * 300.00069 * 1 2 3 20 20 H 1.08998 * 109.47437 * 59.99297 * 1 2 3 21 21 H 1.08994 * 109.47417 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.46987 * 240.00390 * 2 1 3 23 23 H 1.08994 * 109.47781 * 120.00337 * 2 1 3 24 24 H 1.09000 * 109.46740 * 89.99774 * 5 4 3 25 25 H 1.09001 * 109.47217 * 210.00015 * 5 4 3 26 26 H 1.09000 * 109.46896 * 330.00741 * 5 4 3 27 27 H 1.08001 * 119.74615 * 180.02562 * 6 4 3 28 28 H 1.09002 * 109.47136 * 269.97848 * 8 7 6 29 29 H 1.09002 * 109.46729 * 29.98111 * 8 7 6 30 30 H 1.09003 * 109.46697 * 149.97823 * 8 7 6 31 31 H 1.08003 * 120.12267 * 180.27840 * 9 7 6 32 32 H 0.96997 * 120.00151 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2630 2.0720 -1.1905 5 6 2.0113 1.3618 -2.4957 6 6 2.7257 3.3787 -1.1934 7 6 2.9618 4.0443 -0.0002 8 6 3.4642 5.4650 -0.0199 9 6 2.7392 3.4125 1.2017 10 6 2.2679 2.0866 1.2169 11 6 2.0344 1.4278 2.4459 12 1 1.3155 0.6235 2.4995 13 6 2.7349 1.8177 3.5930 14 7 3.8141 2.5490 3.4834 15 14 2.1289 1.2940 5.2806 16 1 0.8972 0.4777 5.1329 17 1 3.1781 0.4884 5.9553 18 1 1.8299 2.4992 6.0951 19 1 -0.3633 0.5139 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 0.9820 1.5338 -2.8102 25 1 2.6924 1.7456 -3.2553 26 1 2.1775 0.2925 -2.3654 27 1 2.9035 3.8820 -2.1323 28 1 4.5542 5.4649 -0.0249 29 1 3.0967 5.9679 -0.9144 30 1 3.1049 5.9896 0.8655 31 1 2.9195 3.9344 2.1299 32 1 4.2998 2.8189 4.2784 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575696820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:01 Heat of formation + Delta-G solvation = -12.629094 kcal Electronic energy + Delta-G solvation = -13157.145334 eV Core-core repulsion = 11081.071027 eV Total energy + Delta-G solvation = -2076.074307 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.16487 -33.86899 -33.72358 -31.01955 -29.81178 -26.45557 -25.22974 -25.13718 -21.74985 -20.37672 -18.43125 -16.72857 -15.29461 -14.55588 -14.31916 -13.38624 -13.05826 -12.70333 -12.53319 -12.37175 -12.17767 -11.76068 -11.58485 -11.33098 -11.23787 -10.98202 -10.86842 -10.51211 -10.37808 -10.14533 -9.83565 -9.28816 -9.15763 -9.01949 -7.19691 -6.97978 -6.65843 -4.27972 2.81808 3.02116 3.10326 3.15346 3.26056 3.97715 4.65506 5.61108 5.91061 5.95228 6.01253 6.13839 6.21137 6.26175 6.32318 6.41238 6.51142 6.56164 6.63060 6.68429 6.73787 6.84264 7.01033 7.08896 7.22080 7.39488 7.56531 7.74671 8.02520 8.15495 8.21521 8.39691 8.71335 8.98319 9.07713 10.26727 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.027612 B = 0.013681 C = 0.009654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.807596 B = 2046.081912 C = 2899.547992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.189 4.189 4 C -0.065 4.065 5 C -0.105 4.105 6 C -0.233 4.233 7 C -0.083 4.083 8 C -0.099 4.099 9 C -0.161 4.161 10 C 0.116 3.884 11 C -0.460 4.460 12 H 0.080 0.920 13 C 0.076 3.924 14 N -0.797 5.797 15 Si 0.902 3.098 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.273 1.273 19 H 0.054 0.946 20 H 0.043 0.957 21 H 0.037 0.963 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.116 0.884 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 -0.694 -3.102 3.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.190 4.190 4 C -0.065 4.065 5 C -0.162 4.162 6 C -0.252 4.252 7 C -0.083 4.083 8 C -0.156 4.156 9 C -0.180 4.180 10 C 0.114 3.886 11 C -0.490 4.490 12 H 0.098 0.902 13 C -0.141 4.141 14 N -0.423 5.423 15 Si 0.727 3.273 16 H -0.184 1.184 17 H -0.201 1.201 18 H -0.198 1.198 19 H 0.074 0.926 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.223 -0.596 -2.954 3.745 hybrid contribution -0.081 -0.103 0.850 0.860 sum -2.304 -0.699 -2.104 3.197 Atomic orbital electron populations 1.21698 0.97090 0.99420 1.01482 1.20176 0.94265 0.94919 1.00593 1.19517 1.11608 0.95407 0.92462 1.19155 0.99886 0.94117 0.93387 1.20723 1.00126 0.99829 0.95481 1.20068 1.13907 0.95706 0.95523 1.19489 1.00195 0.94657 0.93963 1.20621 0.99946 0.94616 1.00444 1.21160 1.06004 0.95107 0.95738 1.17429 0.88640 0.90903 0.91619 1.19579 1.20612 1.16423 0.92376 0.90228 1.25889 0.93467 0.93584 1.01179 1.69845 1.12224 1.28867 1.31338 0.86357 0.79946 0.79238 0.81746 1.18443 1.20121 1.19849 0.92644 0.93790 0.94400 0.93467 0.91685 0.92964 0.93424 0.92358 0.89776 0.92866 0.93478 0.92981 0.86616 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.88 37.16 0.37 -2.22 16 2 C -0.06 -1.31 5.04 -27.89 -0.14 -1.45 16 3 C -0.19 -4.58 5.19 -103.91 -0.54 -5.12 16 4 C -0.07 -1.49 5.87 -104.70 -0.61 -2.11 16 5 C -0.10 -1.92 9.60 36.01 0.35 -1.58 16 6 C -0.23 -5.39 9.36 -39.29 -0.37 -5.75 16 7 C -0.08 -1.98 5.87 -104.70 -0.61 -2.60 16 8 C -0.10 -1.96 10.00 36.01 0.36 -1.60 16 9 C -0.16 -4.26 8.32 -38.88 -0.32 -4.58 16 10 C 0.12 3.11 5.56 -106.83 -0.59 2.52 16 11 C -0.46 -12.14 8.12 -37.74 -0.31 -12.45 16 12 H 0.08 2.03 6.60 -52.49 -0.35 1.68 16 13 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 14 N -0.80 -20.90 10.97 55.55 0.61 -20.29 16 15 Si 0.90 18.91 29.59 -169.99 -5.03 13.88 16 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H 0.05 1.09 7.87 -51.92 -0.41 0.68 16 20 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.90 5.94 -51.92 -0.31 0.59 16 23 H 0.06 1.42 6.78 -51.93 -0.35 1.07 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 26 H 0.06 1.01 5.93 -51.93 -0.31 0.70 16 27 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.12 3.17 6.23 -52.48 -0.33 2.84 16 32 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 LS Contribution 262.38 15.07 3.95 3.95 Total: -1.00 -27.46 262.38 -7.54 -35.00 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.56 Total: 2.56 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: -2.52 Total: -35.10 kcal Atomic # 7 Polarization: -20.90 SS G_CDS: 0.61 Total: -20.29 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.46 -7.54 -35.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575696820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.371 kcal (2) G-P(sol) polarization free energy of solvation -27.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds