Wall clock time and date at job start Mon Mar 30 2020 01:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.37644 * 120.12978 * 269.98338 * 3 2 1 5 5 C 1.50708 * 119.87349 * 0.03948 * 4 3 2 6 6 C 1.38613 * 120.25173 * 180.02562 * 4 3 2 7 7 C 1.38658 * 120.50026 * 0.02562 * 6 4 3 8 8 C 1.50701 * 119.87453 * 180.02562 * 7 6 4 9 9 C 1.37597 * 120.24467 * 0.02562 * 7 6 4 10 10 C 1.40698 * 120.12962 * 90.00210 * 3 2 1 11 11 C 1.41390 * 120.24228 * 359.97438 * 10 3 2 12 12 H 1.07998 * 120.00280 * 334.05277 * 11 10 3 13 13 C 1.39945 * 119.99804 * 154.04561 * 11 10 3 14 14 N 1.30826 * 120.00259 * 343.60810 * 13 11 10 15 15 Si 1.86806 * 119.99911 * 163.60579 * 13 11 10 16 16 H 1.48501 * 109.46904 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47094 * 120.00303 * 15 13 11 18 18 H 1.48500 * 109.46961 * 240.00232 * 15 13 11 19 19 H 1.09010 * 109.46694 * 300.00069 * 1 2 3 20 20 H 1.08998 * 109.47437 * 59.99297 * 1 2 3 21 21 H 1.08994 * 109.47417 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.46987 * 240.00390 * 2 1 3 23 23 H 1.08994 * 109.47781 * 120.00337 * 2 1 3 24 24 H 1.09000 * 109.46740 * 89.99774 * 5 4 3 25 25 H 1.09001 * 109.47217 * 210.00015 * 5 4 3 26 26 H 1.09000 * 109.46896 * 330.00741 * 5 4 3 27 27 H 1.08001 * 119.74615 * 180.02562 * 6 4 3 28 28 H 1.09002 * 109.47136 * 269.97848 * 8 7 6 29 29 H 1.09002 * 109.46729 * 29.98111 * 8 7 6 30 30 H 1.09003 * 109.46697 * 149.97823 * 8 7 6 31 31 H 1.08003 * 120.12267 * 180.27840 * 9 7 6 32 32 H 0.96997 * 120.00151 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2630 2.0720 -1.1905 5 6 2.0113 1.3618 -2.4957 6 6 2.7257 3.3787 -1.1934 7 6 2.9618 4.0443 -0.0002 8 6 3.4642 5.4650 -0.0199 9 6 2.7392 3.4125 1.2017 10 6 2.2679 2.0866 1.2169 11 6 2.0344 1.4278 2.4459 12 1 1.3155 0.6235 2.4995 13 6 2.7349 1.8177 3.5930 14 7 3.8141 2.5490 3.4834 15 14 2.1289 1.2940 5.2806 16 1 0.8972 0.4777 5.1329 17 1 3.1781 0.4884 5.9553 18 1 1.8299 2.4992 6.0951 19 1 -0.3633 0.5139 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 0.9820 1.5338 -2.8102 25 1 2.6924 1.7456 -3.2553 26 1 2.1775 0.2925 -2.3654 27 1 2.9035 3.8820 -2.1323 28 1 4.5542 5.4649 -0.0249 29 1 3.0967 5.9679 -0.9144 30 1 3.1049 5.9896 0.8655 31 1 2.9195 3.9344 2.1299 32 1 4.2998 2.8189 4.2784 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575696820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:00 Heat of formation + Delta-G solvation = -25.692998 kcal Electronic energy + Delta-G solvation = -13157.711827 eV Core-core repulsion = 11081.071027 eV Total energy + Delta-G solvation = -2076.640800 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.96755 -35.74231 -35.42880 -32.73318 -31.53914 -28.13083 -27.01235 -26.88699 -23.40942 -22.21950 -20.21303 -18.64722 -17.08951 -16.30647 -16.08249 -15.11728 -14.68740 -14.32176 -14.17047 -14.05673 -13.70772 -13.33112 -13.28587 -12.99145 -12.92949 -12.68558 -12.47264 -12.20480 -12.07857 -11.82396 -11.55621 -11.06595 -10.97846 -10.84003 -9.10137 -8.81210 -8.53109 -6.25461 1.02256 1.16976 1.37098 1.50824 1.52651 2.21883 2.77447 3.73503 4.31304 4.35110 4.44181 4.57231 4.64930 4.75626 4.79382 4.86566 4.90268 4.97348 5.10514 5.12148 5.19277 5.24826 5.25817 5.32249 5.51147 5.58006 5.73459 5.91462 6.16255 6.28279 6.33162 6.51944 6.80770 7.04784 7.17800 8.40543 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.027612 B = 0.013681 C = 0.009654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.807596 B = 2046.081912 C = 2899.547992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.205 4.205 4 C -0.075 4.075 5 C -0.100 4.100 6 C -0.240 4.240 7 C -0.094 4.094 8 C -0.095 4.095 9 C -0.195 4.195 10 C 0.082 3.918 11 C -0.489 4.489 12 H 0.078 0.922 13 C 0.033 3.967 14 N -0.832 5.832 15 Si 0.974 3.026 16 H -0.257 1.257 17 H -0.268 1.268 18 H -0.268 1.268 19 H 0.033 0.967 20 H 0.052 0.948 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 -1.211 -4.323 5.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.097 4.097 3 C -0.206 4.206 4 C -0.075 4.075 5 C -0.156 4.156 6 C -0.259 4.259 7 C -0.095 4.095 8 C -0.152 4.152 9 C -0.215 4.215 10 C 0.080 3.920 11 C -0.519 4.519 12 H 0.096 0.904 13 C -0.181 4.181 14 N -0.459 5.459 15 Si 0.795 3.205 16 H -0.181 1.181 17 H -0.193 1.193 18 H -0.193 1.193 19 H 0.052 0.948 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.832 -1.111 -4.192 5.180 hybrid contribution 0.131 0.084 1.101 1.112 sum -2.701 -1.027 -3.092 4.232 Atomic orbital electron populations 1.21610 0.95183 1.01197 1.00858 1.20190 0.95876 0.92975 1.00695 1.19967 1.11311 0.97034 0.92309 1.19719 0.98411 0.94352 0.94992 1.20742 1.01682 0.99925 0.93282 1.20495 1.13084 0.96171 0.96170 1.19960 0.99353 0.96635 0.93515 1.20626 1.00381 0.92354 1.01811 1.21146 1.08654 0.95687 0.96016 1.17862 0.89609 0.91508 0.93032 1.19780 1.21452 1.17200 0.93456 0.90410 1.26717 0.93198 0.93429 1.04743 1.69918 1.13288 1.30098 1.32595 0.85281 0.79456 0.78958 0.76767 1.18055 1.19272 1.19262 0.94780 0.92845 0.91399 0.91251 0.93563 0.91152 0.91603 0.91338 0.87144 0.92034 0.90788 0.92948 0.88809 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 9.88 71.98 0.71 -3.93 16 2 C -0.06 -2.47 5.04 29.85 0.15 -2.31 16 3 C -0.20 -9.93 5.19 -19.40 -0.10 -10.03 16 4 C -0.07 -3.28 5.87 -19.91 -0.12 -3.40 16 5 C -0.10 -3.30 9.60 71.24 0.68 -2.62 16 6 C -0.24 -10.74 9.36 22.46 0.21 -10.53 16 7 C -0.09 -4.53 5.87 -19.92 -0.12 -4.64 16 8 C -0.10 -3.65 10.00 71.24 0.71 -2.93 16 9 C -0.20 -10.72 8.32 22.73 0.19 -10.53 16 10 C 0.08 4.52 5.56 -21.29 -0.12 4.40 16 11 C -0.49 -26.73 8.12 23.46 0.19 -26.53 16 12 H 0.08 4.10 6.60 -2.91 -0.02 4.08 16 13 C 0.03 1.70 5.16 85.26 0.44 2.14 16 14 N -0.83 -45.25 10.97 21.83 0.24 -45.01 16 15 Si 0.97 39.56 29.59 68.60 2.03 41.59 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 17 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 18 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 19 H 0.03 1.32 7.87 -2.38 -0.02 1.30 16 20 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.07 2.48 5.94 -2.38 -0.01 2.47 16 23 H 0.05 2.03 6.78 -2.39 -0.02 2.02 16 24 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 26 H 0.07 2.12 5.93 -2.39 -0.01 2.10 16 27 H 0.11 4.28 8.06 -2.91 -0.02 4.25 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.07 2.40 8.08 -2.39 -0.02 2.38 16 30 H 0.05 1.96 8.08 -2.39 -0.02 1.95 16 31 H 0.09 5.43 6.23 -2.91 -0.02 5.41 16 32 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 Total: -1.00 -60.45 262.38 6.20 -54.25 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 1.09 Total: 20.09 kcal Atomic # 6 Polarization: -73.76 SS G_CDS: 2.83 Total: -70.93 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.24 Total: -45.01 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -60.45 6.20 -54.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575696820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.558 kcal (2) G-P(sol) polarization free energy of solvation -60.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds