Wall clock time and date at job start Mon Mar 30 2020 01:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.46920 * 2 1 4 4 C 1.38659 * 119.87618 * 264.99521 * 3 2 1 5 5 C 1.38606 * 120.50687 * 179.97438 * 4 3 2 6 6 C 1.37640 * 120.24789 * 0.02846 * 5 4 3 7 7 C 1.50694 * 120.12969 * 179.97438 * 6 5 4 8 8 C 1.40703 * 119.74463 * 359.97418 * 6 5 4 9 9 C 1.41389 * 120.24756 * 180.02562 * 8 6 5 10 10 H 1.08001 * 119.99877 * 47.30691 * 9 8 6 11 11 C 1.39947 * 120.00096 * 227.31409 * 9 8 6 12 12 N 1.30821 * 119.99902 * 20.11113 * 11 9 8 13 13 Si 1.86801 * 120.00010 * 200.11521 * 11 9 8 14 14 H 1.48493 * 109.47032 * 59.99735 * 13 11 9 15 15 H 1.48494 * 109.47108 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46943 * 299.99789 * 13 11 9 17 17 C 1.37600 * 119.87865 * 84.72473 * 3 2 1 18 18 C 1.50691 * 120.12700 * 359.97438 * 17 3 2 19 19 H 1.09003 * 109.47589 * 300.00108 * 1 2 3 20 20 H 1.09001 * 109.47395 * 60.00436 * 1 2 3 21 21 H 1.09004 * 109.47324 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46920 * 119.99533 * 2 1 3 23 23 H 1.08991 * 109.47173 * 239.99311 * 2 1 3 24 24 H 1.08002 * 119.74575 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.88132 * 180.02562 * 5 4 3 26 26 H 1.09005 * 109.46979 * 95.36165 * 7 6 5 27 27 H 1.09001 * 109.47194 * 215.35730 * 7 6 5 28 28 H 1.08997 * 109.47526 * 335.35993 * 7 6 5 29 29 H 0.97000 * 120.00233 * 174.68721 * 12 11 9 30 30 H 1.09000 * 109.47458 * 89.99720 * 18 17 3 31 31 H 1.08998 * 109.47389 * 210.00197 * 18 17 3 32 32 H 1.08998 * 109.47473 * 330.00007 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3613 2.0370 -1.1977 5 6 2.8240 3.3435 -1.2130 6 6 2.9624 4.0438 -0.0362 7 6 3.4662 5.4639 -0.0558 8 6 2.6315 3.4287 1.1853 9 6 2.7690 4.1384 2.4004 10 1 2.3844 5.1441 2.4848 11 6 3.4037 3.5379 3.4936 12 7 4.2016 2.5181 3.3074 13 14 3.1112 4.1923 5.2186 14 1 1.6660 4.0968 5.5458 15 1 3.8929 3.3884 6.1921 16 1 3.5420 5.6118 5.2891 17 6 2.1573 2.1036 1.1880 18 6 1.7925 1.4336 2.4876 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8932 -0.5137 0.8900 23 1 1.8933 -0.5139 -0.8898 24 1 2.2555 1.4951 -2.1260 25 1 3.0770 3.8138 -2.1517 26 1 2.6192 6.1500 -0.0541 27 1 4.0810 5.6435 0.8262 28 1 4.0628 5.6255 -0.9536 29 1 4.7011 2.1505 4.0533 30 1 2.6692 0.9305 2.8956 31 1 1.4407 2.1830 3.1966 32 1 1.0037 0.7024 2.3106 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575696930.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:32 Heat of formation + Delta-G solvation = -8.151353 kcal Electronic energy + Delta-G solvation = -13324.499405 eV Core-core repulsion = 11248.619268 eV Total energy + Delta-G solvation = -2075.880137 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.27133 -34.18852 -33.47499 -30.40602 -29.95044 -26.96594 -25.43572 -24.34385 -21.95782 -20.29672 -18.47429 -16.87638 -15.13604 -14.66551 -14.27041 -13.46370 -13.06691 -12.94365 -12.46766 -12.20562 -11.95499 -11.62188 -11.47689 -11.23677 -11.11201 -10.88444 -10.77908 -10.58599 -10.41216 -10.28471 -9.93730 -9.41854 -9.21294 -8.73212 -6.99939 -6.93820 -6.55370 -4.29891 2.84100 2.96278 3.14260 3.17647 3.23130 4.06534 4.73384 5.40626 5.68983 5.72655 6.05224 6.17098 6.33772 6.36911 6.42791 6.44281 6.49221 6.67305 6.71950 6.73740 6.87081 6.99448 7.05794 7.13327 7.29482 7.36383 7.49715 7.83715 7.96152 8.00055 8.20707 8.37387 8.66872 8.99746 9.07874 10.42533 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.029897 B = 0.013997 C = 0.010419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.312831 B = 1999.920842 C = 2686.717239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.077 4.077 3 C -0.078 4.078 4 C -0.210 4.210 5 C -0.110 4.110 6 C -0.169 4.169 7 C -0.084 4.084 8 C 0.122 3.878 9 C -0.485 4.485 10 H 0.076 0.924 11 C 0.086 3.914 12 N -0.806 5.806 13 Si 0.891 3.109 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.269 1.269 17 C -0.118 4.118 18 C -0.086 4.086 19 H 0.056 0.944 20 H 0.050 0.950 21 H 0.043 0.957 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.276 0.724 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 -1.605 -1.775 3.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.078 4.078 4 C -0.229 4.229 5 C -0.129 4.129 6 C -0.170 4.170 7 C -0.140 4.140 8 C 0.120 3.880 9 C -0.516 4.516 10 H 0.094 0.906 11 C -0.129 4.129 12 N -0.433 5.433 13 Si 0.717 3.283 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.194 1.194 17 C -0.119 4.119 18 C -0.143 4.143 19 H 0.075 0.925 20 H 0.069 0.931 21 H 0.062 0.938 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.018 -1.805 -1.636 3.878 hybrid contribution 0.073 0.273 0.774 0.824 sum -2.945 -1.532 -0.862 3.430 Atomic orbital electron populations 1.21729 0.96102 1.00098 1.01987 1.20398 0.95125 0.94878 1.01018 1.19271 1.00848 0.94309 0.93412 1.20294 1.11009 0.95929 0.95673 1.20450 1.01651 0.94691 0.96074 1.20026 1.06602 0.96770 0.93562 1.20394 0.99166 0.93974 1.00506 1.17256 0.88188 0.90758 0.91779 1.19156 1.36401 1.01022 0.94979 0.90611 1.25609 0.93874 0.93589 0.99850 1.69796 1.19270 1.20863 1.33353 0.86649 0.79528 0.79660 0.82492 1.19055 1.20619 1.19373 1.19746 1.03333 0.96061 0.92785 1.20641 0.99195 0.98489 0.95936 0.92482 0.93115 0.93778 0.91925 0.92815 0.89417 0.89401 0.93982 0.91741 0.94557 0.91288 0.91651 0.92674 0.95314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.69 37.16 0.36 -1.98 16 2 C -0.08 -1.45 5.36 -27.89 -0.15 -1.60 16 3 C -0.08 -1.80 5.13 -104.70 -0.54 -2.33 16 4 C -0.21 -4.73 9.68 -39.29 -0.38 -5.11 16 5 C -0.11 -2.54 9.66 -39.66 -0.38 -2.92 16 6 C -0.17 -4.16 5.94 -103.91 -0.62 -4.77 16 7 C -0.08 -1.80 9.49 36.00 0.34 -1.45 16 8 C 0.12 3.23 5.21 -106.82 -0.56 2.67 16 9 C -0.48 -12.77 6.91 -37.74 -0.26 -13.03 16 10 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 11 C 0.09 2.17 3.48 -17.34 -0.06 2.11 16 12 N -0.81 -21.10 10.89 55.55 0.60 -20.50 16 13 Si 0.89 19.10 29.61 -169.99 -5.03 14.07 16 14 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 15 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 C -0.12 -2.97 5.59 -103.92 -0.58 -3.55 16 18 C -0.09 -2.02 7.49 36.00 0.27 -1.75 16 19 H 0.06 0.98 6.87 -51.93 -0.36 0.63 16 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 1.18 6.99 -51.93 -0.36 0.82 16 23 H 0.05 0.93 8.05 -51.93 -0.42 0.51 16 24 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 25 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.44 7.33 -51.93 -0.38 1.06 16 28 H 0.04 0.69 8.05 -51.93 -0.42 0.27 16 29 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 30 H 0.07 1.59 6.69 -51.93 -0.35 1.25 16 31 H 0.05 1.33 6.42 -51.93 -0.33 0.99 16 32 H 0.03 0.58 5.38 -51.93 -0.28 0.30 16 LS Contribution 257.92 15.07 3.89 3.89 Total: -1.00 -27.21 257.92 -7.65 -34.86 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.56 Total: 1.39 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: -2.55 Total: -33.71 kcal Atomic # 7 Polarization: -21.10 SS G_CDS: 0.60 Total: -20.50 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.21 -7.65 -34.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575696930.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.711 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds