Wall clock time and date at job start Mon Mar 30 2020 01:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.46920 * 2 1 4 4 C 1.38659 * 119.87618 * 264.99521 * 3 2 1 5 5 C 1.38606 * 120.50687 * 179.97438 * 4 3 2 6 6 C 1.37640 * 120.24789 * 0.02846 * 5 4 3 7 7 C 1.50694 * 120.12969 * 179.97438 * 6 5 4 8 8 C 1.40703 * 119.74463 * 359.97418 * 6 5 4 9 9 C 1.41389 * 120.24756 * 180.02562 * 8 6 5 10 10 H 1.08001 * 119.99877 * 47.30691 * 9 8 6 11 11 C 1.39947 * 120.00096 * 227.31409 * 9 8 6 12 12 N 1.30821 * 119.99902 * 20.11113 * 11 9 8 13 13 Si 1.86801 * 120.00010 * 200.11521 * 11 9 8 14 14 H 1.48493 * 109.47032 * 59.99735 * 13 11 9 15 15 H 1.48494 * 109.47108 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46943 * 299.99789 * 13 11 9 17 17 C 1.37600 * 119.87865 * 84.72473 * 3 2 1 18 18 C 1.50691 * 120.12700 * 359.97438 * 17 3 2 19 19 H 1.09003 * 109.47589 * 300.00108 * 1 2 3 20 20 H 1.09001 * 109.47395 * 60.00436 * 1 2 3 21 21 H 1.09004 * 109.47324 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46920 * 119.99533 * 2 1 3 23 23 H 1.08991 * 109.47173 * 239.99311 * 2 1 3 24 24 H 1.08002 * 119.74575 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.88132 * 180.02562 * 5 4 3 26 26 H 1.09005 * 109.46979 * 95.36165 * 7 6 5 27 27 H 1.09001 * 109.47194 * 215.35730 * 7 6 5 28 28 H 1.08997 * 109.47526 * 335.35993 * 7 6 5 29 29 H 0.97000 * 120.00233 * 174.68721 * 12 11 9 30 30 H 1.09000 * 109.47458 * 89.99720 * 18 17 3 31 31 H 1.08998 * 109.47389 * 210.00197 * 18 17 3 32 32 H 1.08998 * 109.47473 * 330.00007 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3613 2.0370 -1.1977 5 6 2.8240 3.3435 -1.2130 6 6 2.9624 4.0438 -0.0362 7 6 3.4662 5.4639 -0.0558 8 6 2.6315 3.4287 1.1853 9 6 2.7690 4.1384 2.4004 10 1 2.3844 5.1441 2.4848 11 6 3.4037 3.5379 3.4936 12 7 4.2016 2.5181 3.3074 13 14 3.1112 4.1923 5.2186 14 1 1.6660 4.0968 5.5458 15 1 3.8929 3.3884 6.1921 16 1 3.5420 5.6118 5.2891 17 6 2.1573 2.1036 1.1880 18 6 1.7925 1.4336 2.4876 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8932 -0.5137 0.8900 23 1 1.8933 -0.5139 -0.8898 24 1 2.2555 1.4951 -2.1260 25 1 3.0770 3.8138 -2.1517 26 1 2.6192 6.1500 -0.0541 27 1 4.0810 5.6435 0.8262 28 1 4.0628 5.6255 -0.9536 29 1 4.7011 2.1505 4.0533 30 1 2.6692 0.9305 2.8956 31 1 1.4407 2.1830 3.1966 32 1 1.0037 0.7024 2.3106 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575696930.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:32 Heat of formation + Delta-G solvation = -20.867774 kcal Electronic energy + Delta-G solvation = -13325.050831 eV Core-core repulsion = 11248.619268 eV Total energy + Delta-G solvation = -2076.431563 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.05652 -35.91221 -35.27397 -32.22569 -31.58842 -28.82450 -27.10430 -26.21672 -23.49502 -22.13296 -20.25507 -18.76296 -16.93440 -16.40525 -15.97769 -15.18554 -14.77307 -14.50386 -14.19120 -13.88855 -13.67897 -13.31191 -13.17672 -12.99736 -12.79072 -12.67695 -12.38078 -12.31228 -12.13766 -11.81495 -11.66314 -11.19139 -10.96904 -10.62003 -8.83795 -8.79086 -8.44146 -6.26586 1.03067 1.13716 1.39625 1.47252 1.49732 2.27711 2.85416 3.55862 4.21148 4.28317 4.49995 4.58402 4.64448 4.70635 4.82588 4.94075 4.99931 5.02463 5.06837 5.13588 5.20703 5.23191 5.31782 5.38688 5.46066 5.54420 5.69912 6.00843 6.13626 6.17063 6.31409 6.54081 6.77595 7.08805 7.17739 8.54933 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.029897 B = 0.013997 C = 0.010419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.312831 B = 1999.920842 C = 2686.717239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.087 4.087 4 C -0.213 4.213 5 C -0.118 4.118 6 C -0.194 4.194 7 C -0.077 4.077 8 C 0.085 3.915 9 C -0.510 4.510 10 H 0.067 0.933 11 C 0.053 3.947 12 N -0.838 5.838 13 Si 0.952 3.048 14 H -0.264 1.264 15 H -0.273 1.273 16 H -0.265 1.265 17 C -0.146 4.146 18 C -0.073 4.073 19 H 0.043 0.957 20 H 0.053 0.947 21 H 0.075 0.925 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.280 0.720 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 -2.240 -2.497 5.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 C -0.087 4.087 4 C -0.232 4.232 5 C -0.136 4.136 6 C -0.195 4.195 7 C -0.134 4.134 8 C 0.084 3.916 9 C -0.541 4.541 10 H 0.085 0.915 11 C -0.159 4.159 12 N -0.466 5.466 13 Si 0.775 3.225 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.189 1.189 17 C -0.147 4.147 18 C -0.129 4.129 19 H 0.062 0.938 20 H 0.072 0.928 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.629 -2.436 -2.369 4.972 hybrid contribution 0.255 0.443 0.858 0.999 sum -3.374 -1.993 -1.511 4.200 Atomic orbital electron populations 1.21674 0.94126 1.02016 1.01483 1.20448 0.96760 0.92320 1.01777 1.19750 0.99902 0.96232 0.92822 1.20734 1.09665 0.96010 0.96746 1.20819 1.01078 0.95063 0.96659 1.20471 1.06975 0.98294 0.93802 1.20343 0.99506 0.92751 1.00765 1.17682 0.89299 0.91995 0.92660 1.19269 1.37627 1.01044 0.96191 0.91486 1.26211 0.93052 0.93732 1.02911 1.69854 1.20139 1.22159 1.34441 0.85711 0.79401 0.79208 0.78183 1.18827 1.19735 1.18941 1.20057 1.04214 0.96240 0.94196 1.20487 0.99123 0.98244 0.95079 0.93781 0.92827 0.90654 0.92328 0.90895 0.86551 0.86650 0.92911 0.93572 0.92148 0.90943 0.93119 0.94271 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.69 71.98 0.70 -3.39 16 2 C -0.08 -2.68 5.36 29.85 0.16 -2.52 16 3 C -0.09 -3.88 5.13 -19.92 -0.10 -3.98 16 4 C -0.21 -9.14 9.68 22.46 0.22 -8.92 16 5 C -0.12 -5.24 9.66 22.22 0.21 -5.03 16 6 C -0.19 -9.57 5.94 -19.41 -0.12 -9.68 16 7 C -0.08 -3.28 9.49 71.23 0.68 -2.60 16 8 C 0.09 4.59 5.21 -21.29 -0.11 4.48 16 9 C -0.51 -27.58 6.91 23.46 0.16 -27.42 16 10 H 0.07 3.59 7.85 -2.91 -0.02 3.57 16 11 C 0.05 2.74 3.48 85.26 0.30 3.04 16 12 N -0.84 -44.73 10.89 21.83 0.24 -44.49 16 13 Si 0.95 39.63 29.61 68.60 2.03 41.66 16 14 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 15 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 16 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 17 C -0.15 -7.36 5.59 -19.41 -0.11 -7.47 16 18 C -0.07 -3.44 7.49 71.23 0.53 -2.91 16 19 H 0.04 1.42 6.87 -2.39 -0.02 1.41 16 20 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 22 H 0.06 2.11 6.99 -2.39 -0.02 2.09 16 23 H 0.07 2.29 8.05 -2.39 -0.02 2.27 16 24 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 25 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 26 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.05 2.09 7.33 -2.39 -0.02 2.08 16 28 H 0.06 2.21 8.05 -2.39 -0.02 2.19 16 29 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 30 H 0.05 2.51 6.69 -2.39 -0.02 2.50 16 31 H 0.04 1.92 6.42 -2.39 -0.02 1.90 16 32 H 0.05 2.12 5.38 -2.39 -0.01 2.11 16 Total: -1.00 -58.24 257.92 5.88 -52.36 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 1.09 Total: 16.88 kcal Atomic # 6 Polarization: -68.94 SS G_CDS: 2.52 Total: -66.41 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.24 Total: -44.49 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -58.24 5.88 -52.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575696930.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.493 kcal (2) G-P(sol) polarization free energy of solvation -58.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds