Wall clock time and date at job start Mon Mar 30 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86805 * 120.00356 * 2 1 4 4 H 1.48492 * 109.46992 * 274.98223 * 3 2 1 5 5 H 1.48498 * 109.46621 * 34.98332 * 3 2 1 6 6 H 1.48503 * 109.47042 * 154.97906 * 3 2 1 7 7 C 1.38976 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99947 * 185.92245 * 7 2 1 9 9 N 1.37263 * 120.00173 * 5.92346 * 7 2 1 10 10 C 1.36064 * 125.93818 * 174.38591 * 9 7 2 11 11 C 1.36599 * 107.42779 * 180.14418 * 10 9 7 12 12 C 1.47879 * 126.23891 * 179.87302 * 11 10 9 13 13 C 1.35814 * 126.58201 * 179.71757 * 12 11 10 14 14 N 1.34191 * 107.51519 * 179.97438 * 13 12 11 15 15 C 1.30329 * 108.90148 * 359.97438 * 14 13 12 16 16 O 1.34088 * 109.03711 * 0.02562 * 15 14 13 17 17 C 1.41384 * 107.52084 * 359.61104 * 11 10 9 18 18 N 1.30674 * 108.25916 * 0.24224 * 17 11 10 19 19 H 0.97005 * 119.99356 * 359.97438 * 1 2 3 20 20 H 1.08001 * 126.28571 * 0.02562 * 10 9 7 21 21 H 1.07998 * 126.24640 * 0.23875 * 13 12 11 22 22 H 1.08001 * 125.48579 * 180.02562 * 15 14 13 23 23 H 1.08002 * 125.87114 * 180.23939 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 2.3893 2.1071 -1.3947 5 1 1.5011 2.6199 0.8027 6 1 3.5933 1.4120 0.5922 7 6 2.0078 -1.2036 -0.0005 8 1 3.0835 -1.2062 0.0960 9 7 1.3269 -2.3891 -0.1237 10 6 1.8873 -3.6229 -0.2463 11 6 0.8683 -4.5271 -0.3458 12 6 1.0104 -5.9912 -0.4974 13 6 0.0026 -6.8968 -0.5916 14 7 0.5608 -8.1105 -0.7177 15 6 1.8577 -7.9822 -0.7048 16 8 2.1675 -6.6846 -0.5698 17 6 -0.3471 -3.8085 -0.2713 18 7 -0.0650 -2.5394 -0.1394 19 1 -0.4849 0.8401 0.0004 20 1 2.9439 -3.8461 -0.2638 21 1 -1.0551 -6.6793 -0.5731 22 1 2.5685 -8.7909 -0.7894 23 1 -1.3383 -4.2352 -0.3157 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585670122.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:36 Heat of formation + Delta-G solvation = 98.110388 kcal Electronic energy + Delta-G solvation = -12301.600947 eV Core-core repulsion = 9925.529316 eV Total energy + Delta-G solvation = -2376.071631 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.50543 -39.62678 -34.06150 -33.86886 -31.25614 -30.16318 -27.55649 -25.20476 -22.17336 -22.01238 -20.40556 -19.37125 -17.78024 -16.74918 -15.87437 -15.67185 -14.73000 -13.89029 -13.62283 -13.51610 -13.15535 -12.53268 -11.86112 -11.54701 -11.38171 -11.04046 -10.78393 -10.63767 -10.03570 -9.83973 -9.15852 -8.89633 -8.38095 -6.98979 -6.79426 -4.49662 1.91769 2.85472 2.94855 3.00667 3.18089 3.37821 3.52264 3.68794 4.22367 4.47082 4.81085 4.83941 5.61359 5.78884 6.01273 6.11973 6.44607 6.59347 6.73270 6.92029 6.96452 7.24315 7.57095 7.86601 8.31860 8.41659 9.08367 9.32509 10.16491 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.091264 B = 0.007504 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.729608 B = 3730.230756 C = 4024.204573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.048 3.952 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.325 4.325 8 H 0.122 0.878 9 N -0.136 5.136 10 C -0.034 4.034 11 C -0.234 4.234 12 C 0.113 3.887 13 C -0.099 4.099 14 N -0.479 5.479 15 C 0.112 3.888 16 O -0.213 6.213 17 C 0.008 3.992 18 N -0.261 5.261 19 H 0.279 0.721 20 H 0.153 0.847 21 H 0.175 0.825 22 H 0.238 0.762 23 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 -4.342 -0.552 5.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.171 4.171 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.140 0.860 9 N 0.101 4.899 10 C -0.187 4.187 11 C -0.249 4.249 12 C 0.058 3.942 13 C -0.239 4.239 14 N -0.208 5.208 15 C -0.113 4.113 16 O -0.100 6.100 17 C -0.170 4.170 18 N -0.087 5.087 19 H 0.089 0.911 20 H 0.170 0.830 21 H 0.192 0.808 22 H 0.254 0.746 23 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.675 -3.481 -0.471 4.415 hybrid contribution 1.089 0.331 -0.036 1.139 sum 3.765 -3.150 -0.508 4.935 Atomic orbital electron populations 1.70198 1.06315 1.28574 1.33906 1.25727 0.95783 1.00648 0.94921 0.85727 0.79534 0.79401 0.79095 1.19385 1.19868 1.18537 1.20069 0.92510 0.80644 1.52467 0.86035 1.44786 1.03877 1.04450 1.36757 1.22085 0.97930 0.85123 1.13542 1.17157 0.93975 0.85958 1.27769 1.21049 0.82106 0.92114 0.98909 1.22841 1.00300 0.86828 1.13917 1.70103 1.07036 1.27088 1.16528 1.27554 0.93444 0.83633 1.06643 1.84459 1.34989 1.20305 1.70206 1.23662 0.96813 0.91488 1.05070 1.78142 0.90658 1.14852 1.25038 0.91066 0.82966 0.80756 0.74632 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.15 11.83 55.49 0.66 -19.49 14 2 C 0.05 1.17 5.50 -17.51 -0.10 1.07 14 3 Si 0.94 17.97 29.56 -169.99 -5.02 12.95 14 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 14 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 14 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 14 7 C -0.32 -8.24 10.23 -14.85 -0.15 -8.39 14 8 H 0.12 2.76 7.84 -52.48 -0.41 2.35 14 9 N -0.14 -3.60 3.72 -11.31 -0.04 -3.64 14 10 C -0.03 -0.80 11.42 -16.27 -0.19 -0.99 14 11 C -0.23 -5.34 6.09 -105.35 -0.64 -5.98 14 12 C 0.11 2.32 7.24 -36.50 -0.26 2.06 14 13 C -0.10 -1.88 11.65 -17.39 -0.20 -2.09 14 14 N -0.48 -8.71 11.27 -14.64 -0.17 -8.87 14 15 C 0.11 1.77 13.22 52.12 0.69 2.46 14 16 O -0.21 -4.00 10.80 4.07 0.04 -3.96 14 17 C 0.01 0.18 11.80 -16.85 -0.20 -0.01 14 18 N -0.26 -7.02 10.37 30.92 0.32 -6.70 14 19 H 0.28 6.67 8.31 -40.82 -0.34 6.33 14 20 H 0.15 3.18 8.06 -52.49 -0.42 2.76 14 21 H 0.18 2.94 8.06 -52.49 -0.42 2.52 14 22 H 0.24 2.35 8.06 -52.49 -0.42 1.93 14 23 H 0.16 3.18 8.06 -52.49 -0.42 2.76 14 LS Contribution 224.37 15.07 3.38 3.38 Total: -1.00 -30.31 224.37 -3.12 -33.43 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -1.24 Total: 4.77 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.05 Total: -11.87 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.77 Total: -38.70 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.96 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.02 Total: 12.95 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -30.31 -3.12 -33.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585670122.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.539 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds