Wall clock time and date at job start Mon Mar 30 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86805 * 120.00356 * 2 1 4 4 H 1.48492 * 109.46992 * 274.98223 * 3 2 1 5 5 H 1.48498 * 109.46621 * 34.98332 * 3 2 1 6 6 H 1.48503 * 109.47042 * 154.97906 * 3 2 1 7 7 C 1.38976 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99947 * 185.92245 * 7 2 1 9 9 N 1.37263 * 120.00173 * 5.92346 * 7 2 1 10 10 C 1.36064 * 125.93818 * 174.38591 * 9 7 2 11 11 C 1.36599 * 107.42779 * 180.14418 * 10 9 7 12 12 C 1.47879 * 126.23891 * 179.87302 * 11 10 9 13 13 C 1.35814 * 126.58201 * 179.71757 * 12 11 10 14 14 N 1.34191 * 107.51519 * 179.97438 * 13 12 11 15 15 C 1.30329 * 108.90148 * 359.97438 * 14 13 12 16 16 O 1.34088 * 109.03711 * 0.02562 * 15 14 13 17 17 C 1.41384 * 107.52084 * 359.61104 * 11 10 9 18 18 N 1.30674 * 108.25916 * 0.24224 * 17 11 10 19 19 H 0.97005 * 119.99356 * 359.97438 * 1 2 3 20 20 H 1.08001 * 126.28571 * 0.02562 * 10 9 7 21 21 H 1.07998 * 126.24640 * 0.23875 * 13 12 11 22 22 H 1.08001 * 125.48579 * 180.02562 * 15 14 13 23 23 H 1.08002 * 125.87114 * 180.23939 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 2.3893 2.1071 -1.3947 5 1 1.5011 2.6199 0.8027 6 1 3.5933 1.4120 0.5922 7 6 2.0078 -1.2036 -0.0005 8 1 3.0835 -1.2062 0.0960 9 7 1.3269 -2.3891 -0.1237 10 6 1.8873 -3.6229 -0.2463 11 6 0.8683 -4.5271 -0.3458 12 6 1.0104 -5.9912 -0.4974 13 6 0.0026 -6.8968 -0.5916 14 7 0.5608 -8.1105 -0.7177 15 6 1.8577 -7.9822 -0.7048 16 8 2.1675 -6.6846 -0.5698 17 6 -0.3471 -3.8085 -0.2713 18 7 -0.0650 -2.5394 -0.1394 19 1 -0.4849 0.8401 0.0004 20 1 2.9439 -3.8461 -0.2638 21 1 -1.0551 -6.6793 -0.5731 22 1 2.5685 -8.7909 -0.7894 23 1 -1.3383 -4.2352 -0.3157 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585670122.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:36 Heat of formation + Delta-G solvation = 76.109804 kcal Electronic energy + Delta-G solvation = -12302.554964 eV Core-core repulsion = 9925.529316 eV Total energy + Delta-G solvation = -2377.025648 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.95145 -41.44785 -35.67717 -35.49101 -32.99512 -31.92482 -29.22669 -26.98482 -23.66463 -23.57117 -22.16151 -21.07135 -19.52761 -18.22087 -17.48266 -17.32974 -16.28168 -15.45465 -15.38123 -15.19002 -14.74335 -14.07035 -13.56148 -13.28468 -12.95580 -12.78302 -12.21471 -12.08594 -11.54790 -11.47830 -11.00850 -10.56357 -10.24904 -8.68039 -8.58695 -6.38618 0.41892 1.29356 1.38532 1.56689 1.69580 1.86255 1.93478 2.12344 2.49354 2.72249 2.98813 3.61957 4.00311 4.27917 4.35963 4.62682 4.82090 4.84878 5.12848 5.15766 5.51652 5.61831 5.78692 6.07838 6.59938 6.91332 7.27100 7.48295 8.40566 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.091264 B = 0.007504 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.729608 B = 3730.230756 C = 4024.204573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.000 4.000 3 Si 1.020 2.980 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.246 1.246 7 C -0.360 4.360 8 H 0.139 0.861 9 N -0.162 5.162 10 C -0.043 4.043 11 C -0.229 4.229 12 C 0.074 3.926 13 C -0.084 4.084 14 N -0.508 5.508 15 C 0.150 3.850 16 O -0.221 6.221 17 C -0.002 4.002 18 N -0.307 5.307 19 H 0.282 0.718 20 H 0.174 0.826 21 H 0.189 0.811 22 H 0.295 0.705 23 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.972 -5.613 -0.735 7.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.214 4.214 3 Si 0.838 3.162 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.169 1.169 7 C -0.490 4.490 8 H 0.156 0.844 9 N 0.074 4.926 10 C -0.195 4.195 11 C -0.243 4.243 12 C 0.020 3.980 13 C -0.222 4.222 14 N -0.236 5.236 15 C -0.075 4.075 16 O -0.109 6.109 17 C -0.180 4.180 18 N -0.134 5.134 19 H 0.091 0.909 20 H 0.191 0.809 21 H 0.206 0.794 22 H 0.310 0.690 23 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.011 -4.778 -0.653 6.272 hybrid contribution 0.708 0.359 -0.009 0.794 sum 4.718 -4.419 -0.662 6.498 Atomic orbital electron populations 1.70337 1.08291 1.29661 1.35830 1.26882 0.96562 1.04263 0.93645 0.84559 0.78500 0.73972 0.79121 1.19001 1.19640 1.16878 1.20698 0.93578 0.81168 1.53602 0.84382 1.45026 1.03823 1.05386 1.38369 1.22607 0.99257 0.84807 1.12855 1.17357 0.93380 0.87401 1.26158 1.20761 0.83178 0.91403 1.02702 1.23163 1.00895 0.86904 1.11234 1.70202 1.08270 1.26481 1.18661 1.28975 0.93817 0.83422 1.01252 1.84462 1.34596 1.21508 1.70286 1.24131 0.98421 0.90848 1.04566 1.78029 0.91756 1.16807 1.26817 0.90852 0.80903 0.79353 0.69027 0.79322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.38 11.83 21.66 0.26 -44.13 14 2 C 0.00 -0.02 5.50 84.95 0.47 0.45 14 3 Si 1.02 36.96 29.56 68.60 2.03 38.98 14 4 H -0.27 -9.35 7.11 99.48 0.71 -8.64 14 5 H -0.27 -9.61 7.11 99.48 0.71 -8.90 14 6 H -0.25 -8.15 7.11 99.48 0.71 -7.45 14 7 C -0.36 -18.61 10.23 84.02 0.86 -17.75 14 8 H 0.14 6.31 7.84 -2.91 -0.02 6.29 14 9 N -0.16 -8.78 3.72 -189.70 -0.71 -9.49 14 10 C -0.04 -2.06 11.42 83.65 0.96 -1.10 14 11 C -0.23 -10.40 6.09 -20.33 -0.12 -10.53 14 12 C 0.07 2.92 7.24 24.26 0.18 3.09 14 13 C -0.08 -2.99 11.65 83.77 0.98 -2.01 14 14 N -0.51 -16.76 11.27 -314.94 -3.55 -20.31 14 15 C 0.15 4.08 13.22 130.47 1.72 5.81 14 16 O -0.22 -7.68 10.80 -8.35 -0.09 -7.77 14 17 C 0.00 -0.10 11.80 85.64 1.01 0.91 14 18 N -0.31 -17.07 10.37 -56.09 -0.58 -17.65 14 19 H 0.28 13.97 8.31 -92.70 -0.77 13.20 14 20 H 0.17 7.17 8.06 -2.91 -0.02 7.15 14 21 H 0.19 5.98 8.06 -2.91 -0.02 5.95 14 22 H 0.29 3.98 8.06 -2.91 -0.02 3.96 14 23 H 0.19 7.44 8.06 -2.91 -0.02 7.42 14 Total: -1.00 -67.16 224.37 4.64 -62.52 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 1.23 Total: 18.97 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 6.04 Total: -21.13 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -4.58 Total: -91.57 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.09 Total: -7.77 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.98 kcal Total: -67.16 4.64 -62.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585670122.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.630 kcal (2) G-P(sol) polarization free energy of solvation -67.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds