Wall clock time and date at job start Mon Mar 30 2020 02:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81403 * 115.55122 * 2 1 4 4 O 1.42094 * 110.54188 * 282.70510 * 3 2 1 5 5 O 1.42104 * 110.54211 * 145.95466 * 3 2 1 6 6 N 1.65597 * 104.45044 * 34.33043 * 3 2 1 7 7 C 1.36945 * 120.00073 * 64.99736 * 6 3 2 8 8 H 1.08000 * 119.99422 * 359.72775 * 7 6 3 9 9 C 1.38811 * 120.00031 * 179.72699 * 7 6 3 10 10 N 1.31616 * 119.99707 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99814 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47389 * 59.99917 * 11 9 7 13 13 H 1.48501 * 109.47057 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47102 * 299.99569 * 11 9 7 15 15 C 1.53000 * 117.51895 * 145.70151 * 2 1 3 16 16 C 1.52998 * 60.00111 * 107.48250 * 15 2 1 17 17 H 1.08996 * 109.46564 * 85.58130 * 1 2 3 18 18 H 1.08998 * 109.46778 * 205.58526 * 1 2 3 19 19 H 1.08999 * 109.46827 * 325.58026 * 1 2 3 20 20 H 0.97000 * 120.00556 * 244.73185 * 6 3 2 21 21 H 0.97004 * 119.99151 * 179.97438 * 10 9 7 22 22 H 1.08998 * 117.50124 * 214.97308 * 15 2 1 23 23 H 1.08999 * 117.49655 * 359.97438 * 15 2 1 24 24 H 1.09002 * 117.49554 * 252.51244 * 16 15 2 25 25 H 1.08998 * 117.50219 * 107.49406 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.3124 1.6366 0.0000 4 8 2.2635 2.2127 -1.2980 5 8 3.5223 1.6109 0.7450 6 7 1.2959 2.5806 0.9044 7 6 1.1199 2.3161 2.2365 8 1 1.6408 1.4891 2.6961 9 6 0.2722 3.1109 2.9958 10 7 -0.3627 4.1183 2.4353 11 14 0.0328 2.7505 4.8130 12 1 1.3387 2.8477 5.5133 13 1 -0.9148 3.7362 5.3924 14 1 -0.5165 1.3807 4.9778 15 6 2.2369 -1.1209 0.7646 16 6 2.2365 -1.1207 -0.7654 17 1 -0.3632 0.0792 -1.0246 18 1 -0.3633 -0.9269 0.4438 19 1 -0.3633 0.8477 0.5809 20 1 0.8281 3.3233 0.4915 21 1 -0.9554 4.6735 2.9660 22 1 3.1721 -0.8750 1.2677 23 1 1.6120 -1.8585 1.2682 24 1 1.6112 -1.8583 -1.2685 25 1 3.1714 -0.8747 -1.2689 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710170559.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:38 Heat of formation + Delta-G solvation = -73.867054 kcal Electronic energy + Delta-G solvation = -12062.107224 eV Core-core repulsion = 9781.729291 eV Total energy + Delta-G solvation = -2280.377933 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.52048 -37.86728 -36.80005 -36.42527 -32.79064 -29.45693 -26.34127 -23.48471 -22.86359 -20.02477 -19.66284 -18.27999 -17.62538 -16.57912 -16.21367 -15.60639 -15.21074 -14.32188 -14.14888 -13.78241 -13.41886 -13.11793 -12.97436 -12.87323 -12.80261 -12.45630 -12.32752 -12.00508 -11.86546 -11.75797 -11.18112 -11.00103 -10.08175 -8.24522 -5.80752 -0.33767 1.49557 1.53838 1.59441 2.13838 2.38798 2.63188 3.02265 3.31320 3.48010 3.72481 3.92413 4.07683 4.60300 4.67002 4.85457 4.90049 4.90420 5.11467 5.15093 5.34958 5.67435 6.80760 7.04736 7.40495 8.94122 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.041675 B = 0.013404 C = 0.012194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.698908 B = 2088.446461 C = 2295.675836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.652 4.652 3 S 2.618 3.382 4 O -1.019 7.019 5 O -0.999 6.999 6 N -0.980 5.980 7 C -0.302 4.302 8 H 0.106 0.894 9 C -0.022 4.022 10 N -0.934 5.934 11 Si 0.980 3.020 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.258 1.258 15 C -0.121 4.121 16 C -0.121 4.121 17 H 0.067 0.933 18 H 0.083 0.917 19 H 0.063 0.937 20 H 0.402 0.598 21 H 0.269 0.731 22 H 0.104 0.896 23 H 0.130 0.870 24 H 0.137 0.863 25 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.475 -10.925 -1.963 11.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.743 4.743 3 S 2.713 3.287 4 O -1.009 7.009 5 O -0.989 6.989 6 N -0.732 5.732 7 C -0.435 4.435 8 H 0.123 0.877 9 C -0.222 4.222 10 N -0.577 5.577 11 Si 0.804 3.196 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.183 1.183 15 C -0.159 4.159 16 C -0.160 4.160 17 H 0.086 0.914 18 H 0.102 0.898 19 H 0.082 0.918 20 H 0.236 0.764 21 H 0.078 0.922 22 H 0.122 0.878 23 H 0.148 0.852 24 H 0.155 0.845 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.287 -10.674 -2.283 10.991 hybrid contribution -0.938 0.373 0.749 1.257 sum 0.349 -10.301 -1.533 10.420 Atomic orbital electron populations 1.21047 0.87432 1.04106 1.02615 1.32141 1.08136 1.15395 1.18636 1.04824 0.75255 0.76870 0.71749 1.93415 1.88150 1.77083 1.42282 1.93459 1.45563 1.87608 1.72308 1.51203 1.65343 1.39408 1.17231 1.19343 1.25116 1.15281 0.83770 0.87662 1.25939 0.96392 0.96098 1.03813 1.69807 1.30621 1.18951 1.38356 0.85179 0.78046 0.78508 0.77841 1.19852 1.21140 1.18288 1.23077 1.01446 0.96349 0.94981 1.23065 1.01117 0.96785 0.95029 0.91362 0.89842 0.91846 0.76407 0.92193 0.87765 0.85177 0.84541 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.96 9.84 71.98 0.71 -2.26 15 2 C -0.65 -21.63 2.70 -10.79 -0.03 -21.66 15 3 S 2.62 115.16 5.61 -56.49 -0.32 114.84 15 4 O -1.02 -49.12 18.08 -127.65 -2.31 -51.43 15 5 O -1.00 -48.75 17.05 -127.65 -2.18 -50.92 15 6 N -0.98 -48.89 4.65 -54.26 -0.25 -49.15 15 7 C -0.30 -15.51 8.79 84.03 0.74 -14.78 15 8 H 0.11 5.11 7.82 -2.91 -0.02 5.08 15 9 C -0.02 -1.15 5.50 84.86 0.47 -0.68 15 10 N -0.93 -52.03 13.06 21.65 0.28 -51.75 15 11 Si 0.98 41.10 29.55 68.60 2.03 43.13 15 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 13 H -0.29 -11.94 7.11 99.48 0.71 -11.23 15 14 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 15 C -0.12 -3.26 9.81 30.59 0.30 -2.96 15 16 C -0.12 -3.02 10.02 30.59 0.31 -2.71 15 17 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 18 H 0.08 2.16 7.90 -2.39 -0.02 2.14 15 19 H 0.06 2.39 6.40 -2.39 -0.02 2.37 15 20 H 0.40 21.11 7.98 -96.74 -0.77 20.34 15 21 H 0.27 14.25 8.31 -92.71 -0.77 13.48 15 22 H 0.10 2.98 7.66 -2.39 -0.02 2.96 15 23 H 0.13 2.82 8.05 -2.39 -0.02 2.80 15 24 H 0.14 2.55 8.14 -2.39 -0.02 2.53 15 25 H 0.10 2.45 8.14 -2.39 -0.02 2.43 15 Total: -1.00 -65.62 234.53 0.17 -65.44 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.42 Total: 24.89 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 2.49 Total: -45.05 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: 0.03 Total: -100.89 kcal Atomic # 8 Polarization: -97.87 SS G_CDS: -4.48 Total: -102.36 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 16 Polarization: 115.16 SS G_CDS: -0.32 Total: 114.84 kcal Total: -65.62 0.17 -65.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710170559.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.424 kcal (2) G-P(sol) polarization free energy of solvation -65.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds