Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48507 * 109.47028 * 274.97626 * 3 2 1 5 5 H 1.48499 * 109.47288 * 34.98105 * 3 2 1 6 6 H 1.48502 * 109.46913 * 154.98171 * 3 2 1 7 7 C 1.40049 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99645 * 186.12027 * 7 2 1 9 9 C 1.46379 * 119.99677 * 5.84820 * 7 2 1 10 10 O 1.21683 * 120.00200 * 354.23993 * 9 7 2 11 11 N 1.34774 * 119.99548 * 174.24107 * 9 7 2 12 12 C 1.46499 * 120.00008 * 179.97438 * 11 9 7 13 13 C 1.52990 * 109.47401 * 179.97438 * 12 11 9 14 14 H 1.09004 * 115.54966 * 330.66745 * 13 12 11 15 15 C 1.53001 * 117.50258 * 185.00205 * 13 12 11 16 16 C 1.52996 * 59.99921 * 252.50832 * 15 13 12 17 17 F 1.39898 * 117.49969 * 252.50273 * 16 15 13 18 18 F 1.39899 * 117.49945 * 107.48697 * 16 15 13 19 19 H 0.96994 * 119.99806 * 0.02562 * 1 2 3 20 20 H 0.96998 * 120.00269 * 359.97438 * 11 9 7 21 21 H 1.09001 * 109.46991 * 300.00163 * 12 11 9 22 22 H 1.09007 * 109.46799 * 59.99535 * 12 11 9 23 23 H 1.09000 * 117.49511 * 0.02562 * 15 13 12 24 24 H 1.08999 * 117.50522 * 144.99658 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3830 2.1072 -1.3949 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0824 -1.2154 0.1003 9 6 1.2808 -2.4773 -0.1281 10 8 0.0640 -2.4826 -0.1300 11 7 1.9600 -3.6355 -0.2444 12 6 1.2332 -4.9011 -0.3725 13 6 2.2326 -6.0536 -0.4886 14 1 3.1890 -5.8022 -0.9471 15 6 1.6706 -7.4526 -0.7491 16 6 2.2372 -7.1000 0.6276 17 9 3.4687 -7.6609 0.9823 18 9 1.3271 -6.9296 1.6763 19 1 -0.4849 0.8400 -0.0004 20 1 2.9299 -3.6313 -0.2432 21 1 0.6062 -5.0506 0.5064 22 1 0.6074 -4.8720 -1.2646 23 1 0.5887 -7.5518 -0.8382 24 1 2.2571 -8.1215 -1.3789 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717339322.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = -139.447855 kcal Electronic energy + Delta-G solvation = -12946.077321 eV Core-core repulsion = 10109.015205 eV Total energy + Delta-G solvation = -2837.062116 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.065 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.68443 -48.37981 -39.56413 -37.68187 -34.85257 -34.13683 -29.29308 -26.98051 -23.53763 -22.26382 -21.80471 -19.32684 -18.79111 -17.75241 -17.31120 -16.92145 -16.33398 -15.88985 -15.35965 -15.02462 -14.67798 -14.58497 -14.39330 -13.96276 -13.62422 -13.12839 -12.78936 -12.63386 -12.49459 -12.04253 -11.94392 -10.95869 -10.87147 -9.90739 -9.53547 -8.31443 -6.86928 1.41132 1.42181 1.58520 2.04166 2.11097 2.24958 2.45777 2.87098 3.33527 3.57608 3.57783 3.65193 4.06841 4.44961 4.61910 4.69115 4.84588 4.99030 5.31848 5.85198 6.17723 6.23823 6.85527 7.50370 8.45888 8.65223 Molecular weight = 205.07amu Principal moments of inertia in cm(-1) A = 0.066069 B = 0.006987 C = 0.006729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.694614 B = 4006.383473 C = 4160.131347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.536 3.464 10 O -0.633 6.633 11 N -0.755 5.755 12 C 0.156 3.844 13 C -0.156 4.156 14 H 0.155 0.845 15 C -0.127 4.127 16 C 0.166 3.834 17 F -0.167 7.167 18 F -0.178 7.178 19 H 0.275 0.725 20 H 0.397 0.603 21 H 0.037 0.963 22 H 0.060 0.940 23 H 0.134 0.866 24 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.437 -11.040 -2.601 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.340 3.660 10 O -0.520 6.520 11 N -0.410 5.410 12 C 0.031 3.969 13 C -0.175 4.175 14 H 0.172 0.828 15 C -0.164 4.164 16 C 0.130 3.870 17 F -0.148 7.148 18 F -0.159 7.159 19 H 0.085 0.915 20 H 0.232 0.768 21 H 0.055 0.945 22 H 0.078 0.922 23 H 0.152 0.848 24 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.397 -11.006 -2.545 12.982 hybrid contribution 0.449 0.609 0.504 0.909 sum 6.845 -10.397 -2.041 12.615 Atomic orbital electron populations 1.70193 1.09619 1.29063 1.36297 1.27024 0.95540 1.05109 0.91149 0.84961 0.78834 0.74937 0.79256 1.18571 1.19817 1.17171 1.21445 0.95302 0.90179 1.54139 0.89252 1.18645 0.86817 0.84297 0.76215 1.90552 1.16232 1.87625 1.57617 1.45796 1.09421 1.05223 1.80574 1.20454 0.93411 0.82655 1.00333 1.23863 1.03505 0.91722 0.98398 0.82771 1.24546 1.05195 0.95644 0.91050 1.20528 0.78037 1.06237 0.82209 1.92994 1.42333 1.85952 1.93520 1.92981 1.65996 1.95905 1.60983 0.91481 0.76838 0.94493 0.92219 0.84788 0.82093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.69 11.85 21.84 0.26 -50.43 14 2 C 0.03 1.50 5.50 85.30 0.47 1.97 14 3 Si 1.00 40.88 29.56 68.60 2.03 42.90 14 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 14 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 14 6 H -0.25 -9.40 7.11 99.48 0.71 -8.69 14 7 C -0.57 -32.68 9.54 24.83 0.24 -32.44 14 8 H 0.09 4.53 7.85 -2.91 -0.02 4.51 14 9 C 0.54 31.40 7.74 86.36 0.67 32.06 14 10 O -0.63 -42.93 15.04 -4.30 -0.06 -42.99 14 11 N -0.75 -33.79 5.55 -467.42 -2.59 -36.38 14 12 C 0.16 5.88 5.94 86.38 0.51 6.39 14 13 C -0.16 -3.94 5.83 -10.80 -0.06 -4.01 14 14 H 0.15 3.22 8.04 -2.39 -0.02 3.21 14 15 C -0.13 -2.26 10.22 30.59 0.31 -1.95 14 16 C 0.17 4.37 5.20 30.59 0.16 4.53 14 17 F -0.17 -4.43 17.60 44.97 0.79 -3.64 14 18 F -0.18 -5.84 16.48 44.97 0.74 -5.10 14 19 H 0.28 15.30 8.29 -92.71 -0.77 14.53 14 20 H 0.40 15.03 8.38 -92.71 -0.78 14.26 14 21 H 0.04 1.58 7.06 -2.39 -0.02 1.56 14 22 H 0.06 2.31 8.14 -2.38 -0.02 2.29 14 23 H 0.13 2.19 8.14 -2.39 -0.02 2.17 14 24 H 0.16 1.70 8.14 -2.39 -0.02 1.68 14 Total: -1.00 -76.98 231.42 3.91 -73.06 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.46 Total: 16.01 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 2.30 Total: 6.56 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -2.34 Total: -86.81 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -0.06 Total: -42.99 kcal Atomic # 9 Polarization: -10.26 SS G_CDS: 1.53 Total: -8.73 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -76.98 3.91 -73.06 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717339322.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.386 kcal (2) G-P(sol) polarization free energy of solvation -76.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds