Wall clock time and date at job start Mon Mar 30 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46448 * 126.08328 * 2 1 4 4 H 1.09002 * 108.64799 * 302.68900 * 3 2 1 5 5 C 1.50705 * 108.64494 * 60.64534 * 3 2 1 6 6 H 1.08003 * 119.99797 * 35.12126 * 5 3 2 7 7 C 1.37871 * 119.99976 * 215.12163 * 5 3 2 8 8 N 1.31521 * 120.00143 * 354.90870 * 7 5 3 9 9 Si 1.86795 * 120.00303 * 174.90767 * 7 5 3 10 10 H 1.48501 * 109.47419 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47109 * 300.00210 * 9 7 5 12 12 H 1.48503 * 109.46891 * 59.99804 * 9 7 5 13 13 C 1.53199 * 113.70098 * 181.74969 * 3 2 1 14 14 C 1.55551 * 106.24304 * 332.45545 * 13 3 2 15 15 S 1.67290 * 126.08343 * 180.02562 * 2 1 3 16 16 O 1.42105 * 105.40393 * 314.74603 * 15 2 1 17 17 O 1.42101 * 105.40826 * 85.00373 * 15 2 1 18 18 H 1.09004 * 109.46933 * 95.02672 * 1 2 3 19 19 H 1.08999 * 109.47024 * 215.02621 * 1 2 3 20 20 H 1.08997 * 109.46973 * 335.02935 * 1 2 3 21 21 H 0.96999 * 120.00443 * 179.97438 * 8 7 5 22 22 H 1.09005 * 110.09509 * 91.65169 * 13 3 2 23 23 H 1.08996 * 110.10061 * 213.25708 * 13 3 2 24 24 H 1.08997 * 111.37083 * 279.38011 * 14 13 3 25 25 H 1.09008 * 111.41336 * 154.60862 * 14 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3276 1.1835 0.0000 4 1 2.0820 1.7937 -0.8692 5 6 2.0456 1.9852 1.2446 6 1 1.7998 1.4810 2.1675 7 6 2.1015 3.3622 1.2050 8 7 2.4978 3.9731 0.1098 9 14 1.6143 4.3603 2.7069 10 1 1.7609 5.8076 2.4084 11 1 0.2011 4.0686 3.0581 12 1 2.4928 3.9983 3.8481 13 6 3.8234 0.8554 -0.0428 14 6 3.9811 -0.5434 0.6190 15 16 2.4503 -1.3520 -0.0006 16 8 1.8932 -2.2255 0.9720 17 8 2.5763 -1.7268 -1.3655 18 1 -0.3633 -0.0900 -1.0238 19 1 -0.3633 -0.8415 0.5898 20 1 -0.3633 0.9316 0.4338 21 1 2.5367 4.9419 0.0818 22 1 4.1701 0.8224 -1.0757 23 1 4.3866 1.6010 0.5183 24 1 3.9793 -0.4707 1.7066 25 1 4.8741 -1.0552 0.2599 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885346583.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:16 Heat of formation + Delta-G solvation = -88.097279 kcal Electronic energy + Delta-G solvation = -12189.506332 eV Core-core repulsion = 9908.511331 eV Total energy + Delta-G solvation = -2280.995002 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.40512 -37.92721 -36.85133 -34.39389 -33.53080 -28.81597 -26.94114 -25.19066 -22.28558 -19.78013 -18.75920 -17.89390 -17.23599 -16.83282 -16.39820 -15.46234 -15.16476 -14.68443 -14.09302 -13.82141 -13.59243 -13.17634 -13.11950 -12.99984 -12.85503 -12.63057 -12.43335 -12.27933 -11.51207 -11.37014 -11.16760 -10.53892 -9.53220 -8.13533 -6.28281 -0.55255 1.44385 1.47487 1.53840 1.76794 2.43211 2.72919 3.16762 3.37825 3.55410 3.96461 4.20104 4.52280 4.75618 4.76300 4.92235 5.01475 5.18535 5.42889 5.71036 5.72912 6.06899 6.19694 6.85317 7.41343 8.90282 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.052197 B = 0.012370 C = 0.011744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.297286 B = 2263.065067 C = 2383.686877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.988 5.988 3 C 0.216 3.784 4 H 0.037 0.963 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.024 3.976 8 N -0.916 5.916 9 Si 0.951 3.049 10 H -0.287 1.287 11 H -0.276 1.276 12 H -0.269 1.269 13 C -0.101 4.101 14 C -0.550 4.550 15 S 2.560 3.440 16 O -1.005 7.005 17 O -0.999 6.999 18 H 0.049 0.951 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.266 0.734 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.150 0.850 25 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 -5.073 1.487 5.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.830 5.830 3 C 0.111 3.889 4 H 0.055 0.945 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.177 4.177 8 N -0.555 5.555 9 Si 0.777 3.223 10 H -0.212 1.212 11 H -0.201 1.201 12 H -0.194 1.194 13 C -0.141 4.141 14 C -0.685 4.685 15 S 2.661 3.339 16 O -0.994 6.994 17 O -0.989 6.989 18 H 0.068 0.932 19 H 0.087 0.913 20 H 0.088 0.912 21 H 0.075 0.925 22 H 0.096 0.904 23 H 0.116 0.884 24 H 0.168 0.832 25 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.553 -5.894 1.106 6.194 hybrid contribution -0.105 1.443 0.785 1.646 sum 1.448 -4.451 1.891 5.048 Atomic orbital electron populations 1.21064 0.76985 1.02906 1.00532 1.56882 1.13752 1.21236 1.91144 1.19055 0.86823 0.84565 0.98440 0.94452 1.21541 1.47871 0.91404 0.96253 0.92337 1.25635 0.94653 0.98885 0.98494 1.70010 1.47028 1.09734 1.28711 0.85722 0.78957 0.77430 0.80197 1.21231 1.20107 1.19372 1.22422 0.96426 0.94540 1.00705 1.30493 1.17610 1.08128 1.12238 1.06375 0.79377 0.73599 0.74503 1.93476 1.77219 1.66338 1.62413 1.93539 1.87053 1.82888 1.35398 0.93237 0.91310 0.91202 0.92528 0.90441 0.88368 0.83197 0.81570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 4.84 11.10 127.77 1.42 6.26 15 2 N -0.99 -41.12 3.40 -520.19 -1.77 -42.89 15 3 C 0.22 9.86 2.94 44.32 0.13 9.99 15 4 H 0.04 1.95 7.38 -2.39 -0.02 1.93 15 5 C -0.53 -26.26 7.74 25.60 0.20 -26.07 15 6 H 0.06 2.88 7.82 -2.91 -0.02 2.86 15 7 C 0.02 1.23 5.45 84.65 0.46 1.69 15 8 N -0.92 -48.89 12.84 21.45 0.28 -48.61 15 9 Si 0.95 40.52 29.54 68.60 2.03 42.55 15 10 H -0.29 -12.14 7.11 99.48 0.71 -11.43 15 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 15 12 H -0.27 -11.08 7.11 99.48 0.71 -10.38 15 13 C -0.10 -3.82 6.10 31.54 0.19 -3.63 15 14 C -0.55 -16.51 7.65 72.86 0.56 -15.95 15 15 S 2.56 95.19 6.19 -56.49 -0.35 94.84 15 16 O -1.00 -41.32 17.90 -127.81 -2.29 -43.60 15 17 O -1.00 -41.66 18.14 -127.81 -2.32 -43.98 15 18 H 0.05 1.68 8.14 -2.38 -0.02 1.66 15 19 H 0.07 2.32 7.99 -2.39 -0.02 2.30 15 20 H 0.07 2.69 7.76 -2.39 -0.02 2.67 15 21 H 0.27 13.59 8.31 -92.71 -0.77 12.82 15 22 H 0.08 2.72 8.14 -2.38 -0.02 2.70 15 23 H 0.10 3.90 7.77 -2.39 -0.02 3.88 15 24 H 0.15 4.19 8.14 -2.39 -0.02 4.17 15 25 H 0.17 3.55 8.14 -2.38 -0.02 3.53 15 Total: -1.00 -63.34 229.91 -0.29 -63.63 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 1.18 Total: 5.77 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 2.96 Total: -27.70 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -1.49 Total: -91.50 kcal Atomic # 8 Polarization: -82.98 SS G_CDS: -4.61 Total: -87.59 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: 95.19 SS G_CDS: -0.35 Total: 94.84 kcal Total: -63.34 -0.29 -63.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885346583.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.468 kcal (2) G-P(sol) polarization free energy of solvation -63.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds