Wall clock time and date at job start Mon Mar 30 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 108.43543 * 2 1 4 4 C 1.53197 * 108.64618 * 117.91563 * 2 1 3 5 5 C 1.55562 * 106.24122 * 148.66413 * 4 2 1 6 6 S 1.83904 * 99.63813 * 323.00800 * 5 4 2 7 7 O 1.42101 * 111.46251 * 144.09130 * 6 5 4 8 8 O 1.42096 * 111.47015 * 283.93979 * 6 5 4 9 9 N 1.46451 * 108.65164 * 242.08907 * 2 1 3 10 10 C 1.36936 * 126.08559 * 57.18597 * 9 2 1 11 11 H 1.08005 * 120.00154 * 311.79303 * 10 9 2 12 12 C 1.38814 * 119.99794 * 131.78690 * 10 9 2 13 13 N 1.31626 * 119.99372 * 144.16835 * 12 10 9 14 14 Si 1.86790 * 120.00385 * 324.17224 * 12 10 9 15 15 H 1.48494 * 109.47307 * 95.72338 * 14 12 10 16 16 H 1.48504 * 109.47166 * 215.72285 * 14 12 10 17 17 H 1.48508 * 109.47064 * 335.72030 * 14 12 10 18 18 H 1.08999 * 109.47185 * 302.08779 * 1 2 3 19 19 H 1.09003 * 109.47088 * 62.08674 * 1 2 3 20 20 H 1.09001 * 109.47061 * 182.07905 * 1 2 3 21 21 H 1.08996 * 110.10145 * 29.46684 * 4 2 1 22 22 H 1.09005 * 110.09890 * 267.85150 * 4 2 1 23 23 H 1.09003 * 111.37363 * 80.61437 * 5 4 2 24 24 H 1.09005 * 111.36949 * 205.35774 * 5 4 2 25 25 H 0.96996 * 119.99636 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8747 1.0341 0.0000 4 6 2.0197 -0.6796 1.2827 5 6 3.3676 -1.3680 0.9229 6 16 2.9800 -1.9301 -0.7847 7 8 4.1178 -1.8430 -1.6316 8 8 2.1362 -3.0734 -0.7770 9 7 1.9983 -0.6495 -1.2262 10 6 1.6880 -0.2752 -2.5063 11 1 0.6608 -0.0829 -2.7788 12 6 2.6939 -0.1426 -3.4537 13 7 2.4672 -0.4801 -4.7056 14 14 4.3689 0.5144 -2.9521 15 1 5.2848 -0.6219 -2.6785 16 1 4.9245 1.3444 -4.0511 17 1 4.2291 1.3434 -1.7279 18 1 -0.3633 0.5459 0.8707 19 1 -0.3633 0.4811 -0.9081 20 1 -0.3633 -1.0270 0.0373 21 1 1.2951 -1.4241 1.6123 22 1 2.1759 0.0639 2.0644 23 1 4.1919 -0.6548 0.9288 24 1 3.5714 -2.2113 1.5828 25 1 3.1702 -0.3879 -5.3676 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885346627.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:32 Heat of formation + Delta-G solvation = -79.579969 kcal Electronic energy + Delta-G solvation = -12535.407398 eV Core-core repulsion = 10254.781735 eV Total energy + Delta-G solvation = -2280.625663 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.72442 -37.79091 -36.56996 -35.10701 -32.83430 -30.50600 -26.49768 -24.82395 -21.76874 -20.78319 -19.31759 -17.88194 -16.96371 -16.74792 -16.37114 -15.33386 -15.26087 -14.76358 -14.58457 -13.76024 -13.73996 -13.54368 -12.89241 -12.83209 -12.71306 -12.56847 -12.17597 -11.96570 -11.55970 -11.34250 -11.17085 -10.56545 -9.61318 -8.56932 -6.08618 -0.44175 1.42754 1.51329 1.66434 2.05097 2.52717 2.84910 3.08017 3.38419 3.56677 3.84837 4.12856 4.39537 4.59236 4.70143 4.78214 4.89740 4.98239 5.17450 5.45001 5.53839 5.90409 6.18902 7.04517 7.37769 8.51999 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.037545 B = 0.020129 C = 0.017725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.584037 B = 1390.695934 C = 1579.347268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.082 3.918 3 H 0.083 0.917 4 C -0.112 4.112 5 C -0.559 4.559 6 S 2.443 3.557 7 O -0.992 6.992 8 O -1.034 7.034 9 N -0.843 5.843 10 C -0.278 4.278 11 H 0.059 0.941 12 C 0.029 3.971 13 N -0.878 5.878 14 Si 0.903 3.097 15 H -0.230 1.230 16 H -0.301 1.301 17 H -0.241 1.241 18 H 0.093 0.907 19 H 0.040 0.960 20 H 0.042 0.958 21 H 0.099 0.901 22 H 0.147 0.853 23 H 0.156 0.844 24 H 0.164 0.836 25 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 2.939 14.688 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 H 0.101 0.899 4 C -0.150 4.150 5 C -0.693 4.693 6 S 2.552 3.448 7 O -0.982 6.982 8 O -1.022 7.022 9 N -0.677 5.677 10 C -0.415 4.415 11 H 0.076 0.924 12 C -0.180 4.180 13 N -0.514 5.514 14 Si 0.727 3.273 15 H -0.156 1.156 16 H -0.230 1.230 17 H -0.164 1.164 18 H 0.111 0.889 19 H 0.059 0.941 20 H 0.061 0.939 21 H 0.118 0.882 22 H 0.165 0.835 23 H 0.174 0.826 24 H 0.181 0.819 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.999 2.001 13.943 14.227 hybrid contribution 0.410 0.451 -0.341 0.698 sum 2.409 2.453 13.602 14.030 Atomic orbital electron populations 1.22075 0.94909 1.01497 1.02254 1.21671 0.96901 0.99159 0.84822 0.89884 1.22587 0.92734 1.02461 0.97267 1.30409 1.06875 1.12845 1.19126 1.11557 0.76916 0.75894 0.80392 1.93609 1.52995 1.86208 1.65386 1.93401 1.66909 1.54371 1.87527 1.52177 1.67902 1.39728 1.07859 1.17965 0.93262 1.47112 0.83136 0.92363 1.26481 1.02802 0.94174 0.94511 1.70087 1.37009 1.39510 1.04843 0.86303 0.82793 0.79264 0.78894 1.15568 1.22995 1.16396 0.88869 0.94099 0.93880 0.88245 0.83526 0.82622 0.81851 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 9.00 71.98 0.65 -4.05 15 2 C 0.08 2.73 3.44 45.06 0.15 2.89 15 3 H 0.08 2.58 8.14 -2.38 -0.02 2.56 15 4 C -0.11 -2.56 6.07 31.54 0.19 -2.37 15 5 C -0.56 -14.25 7.66 72.87 0.56 -13.69 15 6 S 2.44 108.44 5.99 -56.49 -0.34 108.10 15 7 O -0.99 -50.97 12.16 -127.79 -1.55 -52.53 15 8 O -1.03 -53.20 18.15 -127.79 -2.32 -55.51 15 9 N -0.84 -39.42 2.39 -322.72 -0.77 -40.19 15 10 C -0.28 -15.67 9.63 84.03 0.81 -14.86 15 11 H 0.06 3.50 7.51 -2.91 -0.02 3.48 15 12 C 0.03 1.72 5.01 84.86 0.42 2.14 15 13 N -0.88 -54.14 13.97 21.65 0.30 -53.84 15 14 Si 0.90 45.37 25.78 68.60 1.77 47.14 15 15 H -0.23 -12.08 5.59 99.48 0.56 -11.52 15 16 H -0.30 -14.86 7.11 99.48 0.71 -14.15 15 17 H -0.24 -10.69 7.11 99.48 0.71 -9.98 15 18 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 19 H 0.04 1.49 7.31 -2.39 -0.02 1.47 15 20 H 0.04 1.44 8.10 -2.39 -0.02 1.42 15 21 H 0.10 2.10 7.80 -2.39 -0.02 2.08 15 22 H 0.15 2.01 8.14 -2.38 -0.02 1.99 15 23 H 0.16 3.32 8.14 -2.39 -0.02 3.30 15 24 H 0.16 3.03 8.14 -2.38 -0.02 3.01 15 25 H 0.28 16.09 8.31 -92.71 -0.77 15.32 15 Total: -1.00 -76.66 218.79 0.90 -75.76 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 1.03 Total: 1.02 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 2.79 Total: -29.94 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -0.47 Total: -94.03 kcal Atomic # 8 Polarization: -104.17 SS G_CDS: -3.87 Total: -108.04 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.77 Total: 47.14 kcal Atomic # 16 Polarization: 108.44 SS G_CDS: -0.34 Total: 108.10 kcal Total: -76.66 0.90 -75.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885346627.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.821 kcal (2) G-P(sol) polarization free energy of solvation -76.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds