Wall clock time and date at job start Mon Mar 30 2020 02:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30727 * 1 3 3 Si 1.86800 * 120.00172 * 2 1 4 4 H 1.48501 * 109.46922 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46737 * 119.99992 * 3 2 1 6 6 H 1.48500 * 109.47689 * 240.00178 * 3 2 1 7 7 C 1.40109 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00812 * 162.89860 * 7 2 1 9 9 C 1.41027 * 119.99335 * 342.89884 * 7 2 1 10 10 C 1.40874 * 120.96194 * 336.26117 * 9 7 2 11 11 C 1.37918 * 118.85195 * 179.80631 * 10 9 7 12 12 N 1.31256 * 121.68419 * 0.46961 * 11 10 9 13 13 C 1.34588 * 122.83029 * 359.76846 * 12 11 10 14 14 C 1.45360 * 128.98605 * 179.97438 * 13 12 11 15 15 C 1.31946 * 114.95405 * 180.02562 * 14 13 12 16 16 S 1.75337 * 111.34779 * 359.97438 * 15 14 13 17 17 C 1.39651 * 119.33417 * 359.97438 * 13 12 11 18 18 H 0.97006 * 119.99660 * 359.97438 * 1 2 3 19 19 H 1.07996 * 120.57208 * 0.02703 * 10 9 7 20 20 H 1.08000 * 119.15551 * 180.24082 * 11 10 9 21 21 H 1.07999 * 122.52162 * 0.02562 * 14 13 12 22 22 H 1.08002 * 124.32695 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 1.2763 2.7464 0.0006 5 1 3.0951 1.6963 1.2126 6 1 3.0951 1.6965 -1.2125 7 6 2.0079 -1.2133 -0.0005 8 1 3.0520 -1.2340 -0.2755 9 6 1.3494 -2.4078 0.3581 10 6 0.1984 -2.3852 1.1700 11 6 -0.4133 -3.5790 1.4908 12 7 0.0552 -4.7294 1.0668 13 6 1.1516 -4.8302 0.2927 14 6 1.7829 -6.0227 -0.2480 15 6 2.8581 -5.8003 -0.9796 16 16 3.2149 -4.0868 -1.0856 17 6 1.8314 -3.6702 -0.0850 18 1 -0.4850 0.8401 0.0004 19 1 -0.2001 -1.4490 1.5321 20 1 -1.2982 -3.5671 2.1097 21 1 1.4005 -7.0160 -0.0646 22 1 3.4432 -6.5746 -1.4535 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067871.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:02 Heat of formation + Delta-G solvation = 35.233057 kcal Electronic energy + Delta-G solvation = -10554.315401 eV Core-core repulsion = 8585.977324 eV Total energy + Delta-G solvation = -1968.338077 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.48868 -34.84821 -33.71323 -30.77909 -28.30168 -26.04796 -22.79035 -21.65405 -20.04624 -17.59565 -16.27415 -15.37430 -14.98246 -14.47153 -13.66860 -13.14873 -13.03712 -12.60262 -11.76171 -11.52523 -11.21227 -11.14091 -10.62504 -10.51871 -10.34818 -9.87479 -9.61388 -8.64110 -7.99295 -7.47208 -7.06235 -6.92342 -4.71804 1.86721 2.56060 2.60906 2.93419 2.95113 2.98831 3.16162 3.42726 3.74086 4.53249 5.22297 5.45946 5.94542 6.03684 6.41868 6.61454 6.65467 6.87991 7.01315 7.11713 7.32302 7.61767 7.89419 8.25667 8.51226 8.53706 9.46957 9.88134 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.041373 B = 0.012738 C = 0.009984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.612292 B = 2197.562619 C = 2803.684388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.079 3.921 3 Si 0.916 3.084 4 H -0.274 1.274 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.443 4.443 8 H 0.085 0.915 9 C 0.162 3.838 10 C -0.230 4.230 11 C 0.116 3.884 12 N -0.562 5.562 13 C 0.131 3.869 14 C -0.112 4.112 15 C -0.204 4.204 16 S 0.051 5.949 17 C -0.255 4.255 18 H 0.288 0.712 19 H 0.132 0.868 20 H 0.127 0.873 21 H 0.132 0.868 22 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 -1.300 -0.774 3.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.199 1.199 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.474 4.474 8 H 0.103 0.897 9 C 0.151 3.849 10 C -0.256 4.256 11 C -0.042 4.042 12 N -0.278 5.278 13 C -0.003 4.003 14 C -0.145 4.145 15 C -0.339 4.339 16 S 0.310 5.690 17 C -0.374 4.374 18 H 0.099 0.901 19 H 0.150 0.850 20 H 0.144 0.856 21 H 0.150 0.850 22 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.807 -1.171 -1.283 4.184 hybrid contribution -0.428 0.740 0.403 0.945 sum 3.379 -0.431 -0.879 3.518 Atomic orbital electron populations 1.69760 1.07852 1.30197 1.31690 1.26020 0.94821 1.01773 0.91710 0.86223 0.80184 0.79254 0.80438 1.19921 1.18390 1.18558 1.19561 0.98040 0.90828 1.38926 0.89742 1.17177 0.90804 0.89268 0.87645 1.22030 1.00808 0.98397 1.04405 1.21900 0.97465 0.88198 0.96670 1.67245 1.14191 1.28925 1.17458 1.19768 0.93254 0.90560 0.96740 1.20536 0.96321 0.97725 0.99901 1.24904 1.02476 1.00216 1.06337 1.83456 1.30983 0.98625 1.55903 1.23485 1.03796 0.98758 1.11369 0.90087 0.85003 0.85598 0.85002 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.86 10.92 55.56 0.61 -18.25 14 2 C 0.08 1.88 5.19 -17.32 -0.09 1.79 14 3 Si 0.92 17.69 29.59 -169.99 -5.03 12.66 14 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 14 5 H -0.26 -4.98 7.11 56.52 0.40 -4.58 14 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 14 7 C -0.44 -11.42 8.93 -37.82 -0.34 -11.76 14 8 H 0.08 2.11 7.82 -52.49 -0.41 1.70 14 9 C 0.16 4.33 5.62 -106.32 -0.60 3.73 14 10 C -0.23 -5.92 8.79 -38.70 -0.34 -6.26 14 11 C 0.12 2.82 11.12 -17.91 -0.20 2.62 14 12 N -0.56 -14.25 10.38 -10.35 -0.11 -14.36 14 13 C 0.13 3.25 7.17 -83.30 -0.60 2.65 14 14 C -0.11 -2.29 10.39 -38.66 -0.40 -2.69 14 15 C -0.20 -3.77 11.03 28.82 0.32 -3.45 14 16 S 0.05 1.07 22.95 -107.50 -2.47 -1.40 14 17 C -0.26 -6.49 6.39 -37.53 -0.24 -6.73 14 18 H 0.29 6.32 8.29 -40.82 -0.34 5.98 14 19 H 0.13 3.37 6.19 -52.49 -0.32 3.05 14 20 H 0.13 2.63 8.06 -52.49 -0.42 2.21 14 21 H 0.13 2.35 8.06 -52.49 -0.42 1.93 14 22 H 0.16 2.21 8.06 -52.49 -0.42 1.78 14 LS Contribution 216.27 15.07 3.26 3.26 Total: -1.00 -28.09 216.27 -7.36 -35.45 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -1.14 Total: 2.75 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -2.49 Total: -20.11 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.50 Total: -32.61 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.47 Total: -1.40 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -28.09 -7.36 -35.45 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067871.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.683 kcal (2) G-P(sol) polarization free energy of solvation -28.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds