Wall clock time and date at job start Mon Mar 30 2020 02:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30727 * 1 3 3 Si 1.86800 * 120.00172 * 2 1 4 4 H 1.48501 * 109.46922 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46737 * 119.99992 * 3 2 1 6 6 H 1.48500 * 109.47689 * 240.00178 * 3 2 1 7 7 C 1.40109 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00812 * 162.89860 * 7 2 1 9 9 C 1.41027 * 119.99335 * 342.89884 * 7 2 1 10 10 C 1.40874 * 120.96194 * 336.26117 * 9 7 2 11 11 C 1.37918 * 118.85195 * 179.80631 * 10 9 7 12 12 N 1.31256 * 121.68419 * 0.46961 * 11 10 9 13 13 C 1.34588 * 122.83029 * 359.76846 * 12 11 10 14 14 C 1.45360 * 128.98605 * 179.97438 * 13 12 11 15 15 C 1.31946 * 114.95405 * 180.02562 * 14 13 12 16 16 S 1.75337 * 111.34779 * 359.97438 * 15 14 13 17 17 C 1.39651 * 119.33417 * 359.97438 * 13 12 11 18 18 H 0.97006 * 119.99660 * 359.97438 * 1 2 3 19 19 H 1.07996 * 120.57208 * 0.02703 * 10 9 7 20 20 H 1.08000 * 119.15551 * 180.24082 * 11 10 9 21 21 H 1.07999 * 122.52162 * 0.02562 * 14 13 12 22 22 H 1.08002 * 124.32695 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 1.2763 2.7464 0.0006 5 1 3.0951 1.6963 1.2126 6 1 3.0951 1.6965 -1.2125 7 6 2.0079 -1.2133 -0.0005 8 1 3.0520 -1.2340 -0.2755 9 6 1.3494 -2.4078 0.3581 10 6 0.1984 -2.3852 1.1700 11 6 -0.4133 -3.5790 1.4908 12 7 0.0552 -4.7294 1.0668 13 6 1.1516 -4.8302 0.2927 14 6 1.7829 -6.0227 -0.2480 15 6 2.8581 -5.8003 -0.9796 16 16 3.2149 -4.0868 -1.0856 17 6 1.8314 -3.6702 -0.0850 18 1 -0.4850 0.8401 0.0004 19 1 -0.2001 -1.4490 1.5321 20 1 -1.2982 -3.5671 2.1097 21 1 1.4005 -7.0160 -0.0646 22 1 3.4432 -6.5746 -1.4535 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067871.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:02 Heat of formation + Delta-G solvation = 18.594784 kcal Electronic energy + Delta-G solvation = -10555.036890 eV Core-core repulsion = 8585.977324 eV Total energy + Delta-G solvation = -1969.059567 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.31344 -36.61345 -35.48154 -32.66329 -30.08535 -27.93249 -24.55087 -23.49373 -21.76145 -19.40512 -18.07896 -17.11809 -16.71633 -16.23204 -15.41930 -14.86674 -14.75073 -14.32441 -13.49938 -13.20893 -12.97103 -12.80932 -12.29752 -12.24794 -12.01159 -11.59128 -11.39256 -10.47362 -9.89108 -9.29666 -8.85663 -8.66584 -6.64199 0.15208 0.72682 0.96852 1.34076 1.38624 1.43750 1.48876 1.71803 2.12725 2.69319 3.54029 3.60853 4.31195 4.49183 4.67186 4.77974 5.01090 5.05762 5.25888 5.37177 5.46559 5.70667 6.01515 6.35180 6.61830 6.63129 7.57601 8.11039 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.041373 B = 0.012738 C = 0.009984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.612292 B = 2197.562619 C = 2803.684388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.041 3.959 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.470 4.470 8 H 0.083 0.917 9 C 0.132 3.868 10 C -0.256 4.256 11 C 0.112 3.888 12 N -0.579 5.579 13 C 0.111 3.889 14 C -0.134 4.134 15 C -0.169 4.169 16 S 0.062 5.938 17 C -0.298 4.298 18 H 0.299 0.701 19 H 0.125 0.875 20 H 0.154 0.846 21 H 0.161 0.839 22 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.435 -1.548 -1.459 4.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.180 1.180 7 C -0.499 4.499 8 H 0.101 0.899 9 C 0.122 3.878 10 C -0.282 4.282 11 C -0.047 4.047 12 N -0.296 5.296 13 C -0.023 4.023 14 C -0.166 4.166 15 C -0.304 4.304 16 S 0.321 5.679 17 C -0.416 4.416 18 H 0.110 0.890 19 H 0.143 0.857 20 H 0.171 0.829 21 H 0.178 0.822 22 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.910 -1.438 -1.970 5.482 hybrid contribution -0.759 0.749 0.569 1.208 sum 4.151 -0.689 -1.401 4.435 Atomic orbital electron populations 1.69789 1.09269 1.31817 1.31229 1.26920 0.95578 1.04819 0.90588 0.85133 0.78890 0.74702 0.80439 1.18388 1.18132 1.18046 1.19815 0.98216 0.91830 1.40075 0.89858 1.17605 0.91533 0.90525 0.88180 1.22045 1.01747 0.98656 1.05782 1.22312 0.98059 0.87763 0.96525 1.67322 1.14955 1.29044 1.18292 1.20555 0.93092 0.92278 0.96392 1.20764 0.97198 0.97590 1.01031 1.25462 1.01354 0.99541 1.04093 1.83295 1.29029 1.00845 1.54719 1.23858 1.06052 0.98730 1.12980 0.89007 0.85720 0.82866 0.82180 0.77497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.43 10.92 21.85 0.24 -39.20 14 2 C 0.04 1.95 5.19 85.31 0.44 2.39 14 3 Si 0.99 35.75 29.59 68.60 2.03 37.78 14 4 H -0.26 -8.71 7.11 99.48 0.71 -8.01 14 5 H -0.26 -9.14 7.11 99.48 0.71 -8.43 14 6 H -0.26 -9.01 7.11 99.48 0.71 -8.31 14 7 C -0.47 -24.68 8.93 23.41 0.21 -24.47 14 8 H 0.08 4.23 7.82 -2.92 -0.02 4.21 14 9 C 0.13 7.26 5.62 -20.96 -0.12 7.15 14 10 C -0.26 -13.63 8.79 22.84 0.20 -13.43 14 11 C 0.11 5.54 11.12 84.70 0.94 6.49 14 12 N -0.58 -29.59 10.38 -186.66 -1.94 -31.52 14 13 C 0.11 5.49 7.17 40.90 0.29 5.78 14 14 C -0.13 -5.19 10.39 23.23 0.24 -4.95 14 15 C -0.17 -5.66 11.03 66.95 0.74 -4.92 14 16 S 0.06 2.52 22.95 -56.49 -1.30 1.22 14 17 C -0.30 -15.30 6.39 23.60 0.15 -15.15 14 18 H 0.30 13.09 8.29 -92.70 -0.77 12.32 14 19 H 0.13 6.64 6.19 -2.91 -0.02 6.62 14 20 H 0.15 6.46 8.06 -2.91 -0.02 6.43 14 21 H 0.16 5.21 8.06 -2.91 -0.02 5.19 14 22 H 0.21 4.69 8.06 -2.91 -0.02 4.66 14 Total: -1.00 -61.50 216.27 3.38 -58.12 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.24 Total: 14.69 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 3.10 Total: -41.10 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.70 Total: -70.72 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.30 Total: 1.22 kcal Total: -61.50 3.38 -58.12 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067871.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.718 kcal (2) G-P(sol) polarization free energy of solvation -61.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds