Wall clock time and date at job start Mon Mar 30 2020 02:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 115.54998 * 2 1 4 4 O 1.21288 * 120.00284 * 214.33761 * 3 2 1 5 5 N 1.34777 * 119.99730 * 34.32933 * 3 2 1 6 6 C 1.37095 * 119.99910 * 179.97438 * 5 3 2 7 7 H 1.08005 * 119.99959 * 0.02562 * 6 5 3 8 8 C 1.38950 * 120.00053 * 180.02562 * 6 5 3 9 9 N 1.31413 * 119.99930 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99918 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47057 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 300.00155 * 10 8 6 13 13 H 1.48504 * 109.47102 * 60.00503 * 10 8 6 14 14 C 1.53006 * 117.49820 * 214.33554 * 2 1 3 15 15 C 1.52998 * 117.52153 * 145.70368 * 2 1 3 16 16 F 1.39903 * 117.49793 * 214.96854 * 15 2 1 17 17 F 1.39897 * 117.49697 * 359.97438 * 15 2 1 18 18 H 1.09000 * 109.47657 * 85.58327 * 1 2 3 19 19 H 1.09006 * 109.47026 * 205.58370 * 1 2 3 20 20 H 1.08997 * 109.47209 * 325.57686 * 1 2 3 21 21 H 0.96996 * 119.99887 * 0.02562 * 5 3 2 22 22 H 0.97001 * 119.99781 * 359.97438 * 9 8 6 23 23 H 1.08997 * 117.49886 * 359.96853 * 14 2 1 24 24 H 1.09001 * 117.49523 * 144.97160 * 14 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2240 1.5328 -0.5925 5 7 1.6009 2.3834 0.6583 6 6 2.1924 3.6201 0.6587 7 1 3.1222 3.7742 0.1312 8 6 1.5958 4.6754 1.3378 9 7 0.4647 4.4878 1.9800 10 14 2.4014 6.3607 1.3378 11 1 1.5718 7.3060 2.1274 12 1 3.7537 6.2630 1.9437 13 1 2.5189 6.8532 -0.0582 14 6 2.2364 -1.1207 -0.7655 15 6 2.2369 -1.1209 0.7645 16 9 3.4373 -0.8052 1.4101 17 9 1.4349 -2.0676 1.4109 18 1 -0.3634 0.0791 -1.0246 19 1 -0.3633 -0.9270 0.4438 20 1 -0.3633 0.8477 0.5809 21 1 0.7661 2.2448 1.1323 22 1 0.0462 3.6127 1.9797 23 1 1.6112 -1.8582 -1.2687 24 1 3.1711 -0.8744 -1.2694 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464717681.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:41 Heat of formation + Delta-G solvation = -110.210425 kcal Electronic energy + Delta-G solvation = -13505.683977 eV Core-core repulsion = 10669.889691 eV Total energy + Delta-G solvation = -2835.794286 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.065 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.40944 -47.05670 -38.93629 -35.79170 -34.35312 -31.25006 -28.41750 -25.06364 -22.58142 -22.23123 -19.14592 -18.13765 -17.63812 -16.75644 -15.78352 -15.17830 -14.83892 -13.83155 -13.74810 -13.55828 -13.37724 -13.32183 -13.00531 -12.75978 -12.23068 -11.77996 -11.34910 -11.03418 -10.46244 -10.23738 -9.95272 -9.76007 -9.58506 -8.62774 -8.15552 -6.86407 -3.98937 2.84769 3.26088 3.31416 3.34539 3.51772 4.05136 4.08630 4.38337 4.46399 4.82601 4.92472 5.24015 5.44102 5.64218 5.70212 5.80795 5.92363 6.06650 6.28387 7.67797 7.96940 8.45842 8.65024 9.33958 9.71824 10.56241 Molecular weight = 205.07amu Principal moments of inertia in cm(-1) A = 0.053256 B = 0.009462 C = 0.009063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.637425 B = 2958.563057 C = 3088.705375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.143 4.143 3 C 0.469 3.531 4 O -0.578 6.578 5 N -0.556 5.556 6 C -0.384 4.384 7 H 0.103 0.897 8 C -0.006 4.006 9 N -0.892 5.892 10 Si 1.093 2.907 11 H -0.278 1.278 12 H -0.282 1.282 13 H -0.282 1.282 14 C -0.144 4.144 15 C 0.206 3.794 16 F -0.153 7.153 17 F -0.163 7.163 18 H 0.076 0.924 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.378 0.622 22 H 0.262 0.738 23 H 0.122 0.878 24 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 -8.536 -2.576 9.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.147 4.147 3 C 0.254 3.746 4 O -0.463 6.463 5 N -0.192 5.192 6 C -0.513 4.513 7 H 0.120 0.880 8 C -0.209 4.209 9 N -0.530 5.530 10 Si 0.918 3.082 11 H -0.203 1.203 12 H -0.208 1.208 13 H -0.208 1.208 14 C -0.182 4.182 15 C 0.169 3.831 16 F -0.133 7.133 17 F -0.144 7.144 18 H 0.095 0.905 19 H 0.089 0.911 20 H 0.089 0.911 21 H 0.213 0.787 22 H 0.073 0.927 23 H 0.140 0.860 24 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.947 -6.823 -2.351 7.278 hybrid contribution -0.302 -1.905 -0.025 1.929 sum -1.249 -8.728 -2.376 9.131 Atomic orbital electron populations 1.21392 0.89718 1.03285 1.03392 1.22995 0.97280 0.92669 1.01801 1.18291 0.86888 0.83683 0.85692 1.90534 1.24255 1.83215 1.48294 1.41883 1.22856 1.09295 1.45166 1.20623 1.09701 0.86109 1.34826 0.87962 1.26626 0.96131 1.04604 0.93555 1.70907 1.16784 1.25440 1.39885 0.83114 0.75218 0.72919 0.76933 1.20258 1.20815 1.20824 1.24287 1.04754 0.98774 0.90408 1.20061 0.81001 0.93038 0.89009 1.93053 1.44254 1.92610 1.83385 1.92971 1.72479 1.65158 1.83776 0.90545 0.91078 0.91083 0.78742 0.92659 0.85996 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.76 37.16 0.36 -1.43 14 2 C -0.14 -2.63 2.61 -155.66 -0.41 -3.04 14 3 C 0.47 11.41 6.98 -10.98 -0.08 11.33 14 4 O -0.58 -16.00 15.83 5.55 0.09 -15.91 14 5 N -0.56 -14.22 5.18 -10.96 -0.06 -14.28 14 6 C -0.38 -10.78 9.68 -14.93 -0.14 -10.93 14 7 H 0.10 3.02 7.16 -52.48 -0.38 2.65 14 8 C -0.01 -0.15 5.50 -17.47 -0.10 -0.25 14 9 N -0.89 -24.76 13.68 55.50 0.76 -24.00 14 10 Si 1.09 23.95 29.92 -169.99 -5.09 18.86 14 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 14 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 14 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 14 14 C -0.14 -2.22 9.73 -26.72 -0.26 -2.48 14 15 C 0.21 3.68 5.14 -26.73 -0.14 3.54 14 16 F -0.15 -3.15 17.13 2.25 0.04 -3.11 14 17 F -0.16 -2.66 16.50 2.25 0.04 -2.62 14 18 H 0.08 1.00 8.14 -51.93 -0.42 0.58 14 19 H 0.07 0.91 7.10 -51.93 -0.37 0.54 14 20 H 0.07 1.10 6.38 -51.93 -0.33 0.77 14 21 H 0.38 8.93 5.03 -40.82 -0.21 8.73 14 22 H 0.26 7.01 6.78 -40.82 -0.28 6.73 14 23 H 0.12 1.39 8.14 -51.93 -0.42 0.97 14 24 H 0.13 2.14 7.67 -51.93 -0.40 1.74 14 LS Contribution 225.37 15.07 3.40 3.40 Total: -1.00 -31.75 225.37 -3.18 -34.93 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -1.60 Total: 6.00 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.76 Total: -3.26 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.70 Total: -38.28 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.09 Total: -15.91 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.08 Total: -5.74 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.09 Total: 18.86 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -31.75 -3.18 -34.93 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464717681.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.284 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds