Wall clock time and date at job start Mon Mar 30 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00066 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99838 * 180.02562 * 11 10 9 14 14 H 1.09007 * 115.54768 * 325.58010 * 13 11 10 15 15 C 1.52999 * 117.50235 * 111.25265 * 13 11 10 16 16 C 1.52999 * 117.50114 * 179.91692 * 13 11 10 17 17 F 1.39903 * 117.49740 * 359.97438 * 16 13 11 18 18 F 1.39896 * 117.50167 * 144.99814 * 16 13 11 19 19 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 21 21 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 22 22 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 23 23 H 1.09001 * 117.50236 * 214.97763 * 15 13 11 24 24 H 1.09003 * 117.49771 * 359.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7330 -6.0288 0.0016 14 1 3.6552 -5.8591 -0.5543 15 6 2.8181 -6.8849 1.2668 16 6 2.1606 -7.4477 0.0042 17 9 0.7681 -7.5824 0.0063 18 9 2.8608 -8.4280 -0.7069 19 1 -0.4849 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 3.1567 -3.4354 0.0009 23 1 3.7962 -7.2789 1.5431 24 1 2.1661 -6.6194 2.0990 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467579729.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:12 Heat of formation + Delta-G solvation = -135.216851 kcal Electronic energy + Delta-G solvation = -12940.983694 eV Core-core repulsion = 10104.105048 eV Total energy + Delta-G solvation = -2836.878646 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.065 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.67569 -48.35194 -40.72173 -36.77533 -36.08597 -34.36119 -29.63838 -26.09161 -23.96429 -23.43995 -21.39913 -19.52750 -18.58609 -17.85881 -17.17439 -17.08133 -16.67927 -16.22180 -15.74794 -15.00686 -14.82731 -14.59856 -14.48465 -14.05185 -13.92457 -13.42999 -12.96326 -12.68626 -12.25463 -12.22290 -11.53081 -11.18284 -10.83297 -10.80332 -9.90698 -8.29507 -6.46675 1.31315 1.44416 1.48513 1.56682 1.89994 2.12094 2.35696 2.51283 3.05533 3.24265 3.47535 3.57597 3.98548 4.50538 4.60475 4.80335 5.08682 5.20949 5.43647 5.64022 5.82274 6.63240 6.79937 7.21457 7.39455 8.82422 Molecular weight = 205.07amu Principal moments of inertia in cm(-1) A = 0.081635 B = 0.006588 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.907753 B = 4249.098086 C = 4458.553457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.264 3.736 10 N -0.695 5.695 11 C 0.517 3.483 12 O -0.590 6.590 13 C -0.189 4.189 14 H 0.186 0.814 15 C -0.109 4.109 16 C 0.197 3.803 17 F -0.168 7.168 18 F -0.157 7.157 19 H 0.269 0.731 20 H -0.012 1.012 21 H -0.009 1.009 22 H 0.413 0.587 23 H 0.181 0.819 24 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.320 -10.732 2.101 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.595 4.595 8 H 0.105 0.895 9 C 0.142 3.858 10 N -0.344 5.344 11 C 0.303 3.697 12 O -0.471 6.471 13 C -0.211 4.211 14 H 0.203 0.797 15 C -0.146 4.146 16 C 0.159 3.841 17 F -0.149 7.149 18 F -0.137 7.137 19 H 0.078 0.922 20 H 0.006 0.994 21 H 0.009 0.991 22 H 0.249 0.751 23 H 0.198 0.802 24 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.296 -10.779 2.073 15.050 hybrid contribution -0.122 0.802 -0.368 0.891 sum 10.174 -9.977 1.706 14.351 Atomic orbital electron populations 1.70137 1.08339 1.28686 1.49844 1.26095 0.95779 1.04025 0.93822 0.85178 0.77860 0.76451 0.79553 1.18669 1.21263 1.18472 1.21589 0.94442 0.90377 1.53075 0.89464 1.18609 0.88702 0.84180 0.94327 1.46080 1.11557 1.04911 1.71848 1.20113 0.88541 0.84458 0.76546 1.90737 1.18889 1.85360 1.52115 1.23701 1.02267 0.88551 1.06553 0.79677 1.24501 1.05621 0.94283 0.90215 1.19952 0.74563 0.87461 1.02089 1.93061 1.28651 1.96237 1.96948 1.93026 1.77054 1.63511 1.80131 0.92239 0.99436 0.99108 0.75055 0.80177 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.29 21.45 0.28 -55.53 14 2 C 0.00 0.13 5.46 84.65 0.46 0.60 14 3 Si 0.99 41.48 29.54 68.60 2.03 43.51 14 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 14 5 H -0.29 -12.07 7.11 99.48 0.71 -11.36 14 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 14 7 C -0.56 -29.62 9.28 25.60 0.24 -29.38 14 8 H 0.09 4.12 7.60 -2.91 -0.02 4.09 14 9 C 0.26 14.29 5.43 85.63 0.46 14.75 14 10 N -0.69 -28.20 5.55 -466.77 -2.59 -30.79 14 11 C 0.52 20.25 7.61 87.66 0.67 20.91 14 12 O -0.59 -29.59 15.14 -3.04 -0.05 -29.64 14 13 C -0.19 -4.72 6.17 -11.54 -0.07 -4.79 14 14 H 0.19 3.06 8.14 -2.38 -0.02 3.04 14 15 C -0.11 -1.98 10.21 30.62 0.31 -1.67 14 16 C 0.20 5.28 5.19 30.62 0.16 5.43 14 17 F -0.17 -6.12 15.71 44.97 0.71 -5.41 14 18 F -0.16 -3.87 17.60 44.97 0.79 -3.08 14 19 H 0.27 15.09 8.31 -92.71 -0.77 14.32 14 20 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 14 21 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 14 22 H 0.41 13.24 8.32 -92.71 -0.77 12.47 14 23 H 0.18 1.52 8.14 -2.39 -0.02 1.50 14 24 H 0.12 2.44 8.14 -2.39 -0.02 2.43 14 Total: -1.00 -73.12 232.44 3.87 -69.25 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.46 Total: 5.85 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 2.23 Total: 5.85 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -2.30 Total: -86.32 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.05 Total: -29.64 kcal Atomic # 9 Polarization: -9.99 SS G_CDS: 1.50 Total: -8.49 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -73.12 3.87 -69.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467579729.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.967 kcal (2) G-P(sol) polarization free energy of solvation -73.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds