Wall clock time and date at job start Mon Mar 30 2020 02:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38308 * 119.96725 * 2 1 4 4 C 1.38256 * 120.15034 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07764 * 0.02562 * 4 3 2 6 6 C 1.38885 * 119.92371 * 359.97438 * 5 4 3 7 7 N 1.39678 * 120.07779 * 179.97438 * 6 5 4 8 8 C 1.46497 * 119.99559 * 359.97438 * 7 6 5 9 9 H 1.08997 * 109.47471 * 325.00594 * 8 7 6 10 10 C 1.53003 * 109.47133 * 85.00203 * 8 7 6 11 11 C 1.50700 * 109.47128 * 205.00046 * 8 7 6 12 12 H 1.07999 * 119.99988 * 0.02562 * 11 8 7 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 8 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 8 16 16 H 1.48508 * 109.47021 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47081 * 119.99727 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00099 * 15 13 11 19 19 C 1.38088 * 119.96112 * 180.28456 * 2 1 3 20 20 H 1.08999 * 109.47475 * 89.99115 * 1 2 3 21 21 H 1.09001 * 109.47085 * 209.99733 * 1 2 3 22 22 H 1.09005 * 109.46592 * 329.99211 * 1 2 3 23 23 H 1.07998 * 119.92036 * 0.05009 * 3 2 1 24 24 H 1.08007 * 119.95868 * 180.02562 * 4 3 2 25 25 H 1.07996 * 120.03810 * 179.97438 * 5 4 3 26 26 H 0.97000 * 120.00237 * 179.97438 * 7 6 5 27 27 H 1.08996 * 109.47248 * 300.00223 * 10 8 7 28 28 H 1.09005 * 109.46932 * 59.99872 * 10 8 7 29 29 H 1.08998 * 109.47453 * 179.97438 * 10 8 7 30 30 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 31 31 H 1.08004 * 120.03647 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5804 1.2026 -0.0005 5 6 4.2765 0.0096 -0.0016 6 6 3.5859 -1.1955 -0.0016 7 7 4.2866 -2.4038 -0.0032 8 6 5.7515 -2.4010 -0.0055 9 1 6.1124 -1.5582 -0.5950 10 6 6.2635 -2.2749 1.4308 11 6 6.2554 -3.6874 -0.6073 12 1 5.5545 -4.4324 -0.9539 13 6 7.6113 -3.9133 -0.7155 14 7 8.4648 -3.0037 -0.2985 15 14 8.2359 -5.5076 -1.4622 16 1 7.0819 -6.3554 -1.8557 17 1 9.0590 -5.2040 -2.6603 18 1 9.0633 -6.2311 -0.4635 19 6 2.1966 -1.1963 -0.0059 20 1 -0.3634 0.0002 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5140 23 1 1.6561 2.1324 0.0008 24 1 4.1168 2.1401 -0.0001 25 1 5.3564 0.0138 -0.0024 26 1 3.8032 -3.2448 -0.0029 27 1 5.8991 -1.3445 1.8661 28 1 5.9027 -3.1178 2.0204 29 1 7.3535 -2.2733 1.4292 30 1 9.4187 -3.1629 -0.3743 31 1 1.6566 -2.1316 -0.0102 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032006798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:04 Heat of formation + Delta-G solvation = -4.291672 kcal Electronic energy + Delta-G solvation = -12823.317990 eV Core-core repulsion = 10682.179310 eV Total energy + Delta-G solvation = -2141.138680 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.30276 -37.40734 -34.74884 -33.05195 -31.76555 -28.81511 -27.65194 -27.19455 -23.20498 -23.14276 -20.91376 -18.96983 -17.49842 -17.05698 -16.64122 -15.91218 -15.08805 -14.81811 -14.62980 -14.28718 -13.96896 -13.67904 -13.33716 -13.02049 -12.84514 -12.80732 -12.61406 -12.30399 -12.21874 -11.92976 -11.61384 -11.10225 -10.79072 -10.48903 -9.49304 -8.23308 -8.04304 -6.36257 0.63959 0.90415 1.40169 1.41625 1.53249 2.35912 2.95220 3.08047 3.12334 4.09689 4.17351 4.43742 4.63999 4.69612 4.70849 4.80126 4.93923 4.95242 5.06327 5.07600 5.17168 5.36898 5.42169 5.60789 5.62595 5.79152 5.82124 5.90527 6.08134 6.26482 6.55786 6.85483 7.22339 7.37100 8.85236 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.059508 B = 0.007298 C = 0.006843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.409783 B = 3835.904751 C = 4090.680034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.044 4.044 3 C -0.200 4.200 4 C -0.072 4.072 5 C -0.236 4.236 6 C 0.212 3.788 7 N -0.734 5.734 8 C 0.276 3.724 9 H 0.008 0.992 10 C -0.138 4.138 11 C -0.548 4.548 12 H 0.061 0.939 13 C 0.017 3.983 14 N -0.915 5.915 15 Si 0.968 3.032 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.277 1.277 19 C -0.223 4.223 20 H 0.079 0.921 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.140 0.860 24 H 0.134 0.866 25 H 0.097 0.903 26 H 0.393 0.607 27 H 0.021 0.979 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.266 0.734 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.591 4.826 0.732 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.045 4.045 3 C -0.220 4.220 4 C -0.091 4.091 5 C -0.259 4.259 6 C 0.105 3.895 7 N -0.358 5.358 8 C 0.172 3.828 9 H 0.025 0.975 10 C -0.197 4.197 11 C -0.586 4.586 12 H 0.079 0.921 13 C -0.183 4.183 14 N -0.553 5.553 15 Si 0.793 3.207 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.203 1.203 19 C -0.246 4.246 20 H 0.097 0.903 21 H 0.088 0.912 22 H 0.100 0.900 23 H 0.158 0.842 24 H 0.152 0.848 25 H 0.115 0.885 26 H 0.227 0.773 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.162 4.854 0.743 12.195 hybrid contribution 0.848 -1.133 -0.296 1.446 sum -10.314 3.721 0.446 10.974 Atomic orbital electron populations 1.20811 0.89018 1.03525 1.03035 1.20000 0.97233 0.92052 0.95238 1.20965 0.93548 0.98113 1.09405 1.21084 0.94956 0.96815 0.96228 1.20791 0.99249 0.92576 1.13306 1.18307 0.91967 0.86951 0.92238 1.45245 1.06552 1.04554 1.79481 1.18335 0.75919 0.95886 0.92636 0.97454 1.21988 1.02583 0.97214 0.97882 1.21579 0.92493 1.03336 1.41235 0.92127 1.25714 0.96770 1.00291 0.95501 1.70016 1.02624 1.35552 1.47135 0.85355 0.78257 0.79051 0.78028 1.19144 1.20541 1.20250 1.20616 0.91170 0.99111 1.13733 0.90262 0.91164 0.90047 0.84181 0.84840 0.88454 0.77335 0.95977 0.95254 0.91482 0.92467 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 10.01 71.24 0.71 -1.41 16 2 C -0.04 -1.28 5.88 -19.88 -0.12 -1.39 16 3 C -0.20 -5.71 9.70 22.29 0.22 -5.50 16 4 C -0.07 -2.37 10.04 22.25 0.22 -2.15 16 5 C -0.24 -9.59 8.85 22.40 0.20 -9.39 16 6 C 0.21 8.64 6.64 38.21 0.25 8.89 16 7 N -0.73 -32.56 5.24 -322.51 -1.69 -34.25 16 8 C 0.28 14.27 2.25 44.25 0.10 14.37 16 9 H 0.01 0.44 6.49 -2.39 -0.02 0.43 16 10 C -0.14 -6.92 9.20 71.98 0.66 -6.26 16 11 C -0.55 -29.94 8.73 25.60 0.22 -29.71 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 13 C 0.02 0.94 5.30 84.66 0.45 1.39 16 14 N -0.91 -51.94 11.33 21.45 0.24 -51.69 16 15 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 19 C -0.22 -7.58 9.55 22.40 0.21 -7.36 16 20 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 22 H 0.08 1.31 8.09 -2.38 -0.02 1.29 16 23 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 24 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 25 H 0.10 4.39 6.11 -2.91 -0.02 4.37 16 26 H 0.39 16.19 8.55 -92.71 -0.79 15.40 16 27 H 0.02 1.02 7.71 -2.39 -0.02 1.00 16 28 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.07 3.65 6.08 -2.39 -0.01 3.64 16 30 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -59.86 261.18 4.04 -55.82 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.32 Total: 23.81 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 3.14 Total: -38.53 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -1.45 Total: -85.94 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -59.86 4.04 -55.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032006798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.532 kcal (2) G-P(sol) polarization free energy of solvation -59.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds