Wall clock time and date at job start Mon Mar 30 2020 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46705 * 2 1 4 4 C 1.50695 * 109.47401 * 120.00278 * 2 1 3 5 5 H 1.08002 * 120.00085 * 119.99650 * 4 2 1 6 6 C 1.37879 * 120.00194 * 300.00267 * 4 2 1 7 7 N 1.31512 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00208 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47570 * 59.99399 * 8 6 4 10 10 H 1.48498 * 109.47363 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46878 * 299.99758 * 8 6 4 12 12 C 1.50701 * 109.46851 * 240.00467 * 2 1 3 13 13 O 1.20831 * 119.99814 * 270.00047 * 12 2 1 14 14 C 1.47546 * 120.00192 * 89.99789 * 12 2 1 15 15 C 1.40057 * 120.94623 * 0.29340 * 14 12 2 16 16 C 1.38124 * 118.96866 * 180.21846 * 15 14 12 17 17 N 1.31810 * 120.91947 * 359.48099 * 16 15 14 18 18 C 1.31807 * 122.11672 * 0.27347 * 17 16 15 19 19 C 1.38126 * 120.92250 * 359.97438 * 18 17 16 20 20 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46746 * 299.99679 * 1 2 3 22 22 H 1.08991 * 109.47229 * 59.99530 * 1 2 3 23 23 H 0.96999 * 119.99823 * 179.97438 * 7 6 4 24 24 H 1.08001 * 120.51860 * 359.97438 * 15 14 12 25 25 H 1.08002 * 119.54321 * 179.76221 * 16 15 14 26 26 H 1.08000 * 119.54371 * 179.97438 * 18 17 16 27 27 H 1.08001 * 120.52028 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.8077 -1.1192 4.0076 10 1 1.8281 -0.4195 5.2204 11 1 1.8282 -2.5200 4.0079 12 6 2.0323 -0.7103 -1.2305 13 8 2.2337 -1.9014 -1.2007 14 6 2.2782 0.0485 -2.4718 15 6 2.0573 1.4305 -2.5268 16 6 2.2964 2.0996 -3.7112 17 7 2.7357 1.4573 -4.7751 18 6 2.9616 0.1588 -4.7661 19 6 2.7451 -0.5914 -3.6268 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 0.7090 1.1611 3.4844 24 1 1.7016 1.9641 -1.6577 25 1 2.1255 3.1646 -3.7651 26 1 3.3211 -0.3254 -5.6621 27 1 2.9320 -1.6552 -3.6268 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426625.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:39 Heat of formation + Delta-G solvation = -8.853418 kcal Electronic energy + Delta-G solvation = -12681.338891 eV Core-core repulsion = 10404.169304 eV Total energy + Delta-G solvation = -2277.169587 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.08027 -38.22489 -33.94528 -32.39493 -31.15487 -30.28001 -25.26975 -24.98757 -23.27153 -21.96786 -19.16886 -16.89341 -16.35034 -15.80202 -15.35435 -14.79314 -14.20891 -13.98079 -13.57947 -13.45436 -13.12220 -12.51556 -11.62599 -11.45242 -11.09996 -10.81374 -10.77611 -10.34526 -10.15119 -9.57534 -9.53269 -9.09811 -8.99666 -8.63019 -8.38624 -6.11573 -4.17215 0.96807 1.29597 3.15763 3.30000 3.33306 3.38388 4.12619 4.34886 4.55954 4.68110 4.98373 5.20978 5.28077 5.31518 5.75207 5.86544 5.97282 6.29428 6.50384 6.64528 6.78720 6.82478 6.90115 7.39232 7.67847 7.91098 8.05103 8.13494 8.46357 8.86486 9.47961 10.95213 Molecular weight = 205.08amu Principal moments of inertia in cm(-1) A = 0.055683 B = 0.008499 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.728821 B = 3293.875604 C = 3518.616913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.007 3.993 3 H 0.053 0.947 4 C -0.510 4.510 5 H 0.065 0.935 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.398 3.602 13 O -0.452 6.452 14 C -0.110 4.110 15 C -0.123 4.123 16 C 0.083 3.917 17 N -0.479 5.479 18 C 0.082 3.918 19 C -0.130 4.130 20 H 0.033 0.967 21 H 0.096 0.904 22 H 0.014 0.986 23 H 0.263 0.737 24 H 0.151 0.849 25 H 0.158 0.842 26 H 0.155 0.845 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 2.015 -9.157 9.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.012 4.012 3 H 0.071 0.929 4 C -0.548 4.548 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.274 3.726 13 O -0.325 6.325 14 C -0.119 4.119 15 C -0.142 4.142 16 C -0.073 4.073 17 N -0.189 5.189 18 C -0.075 4.075 19 C -0.150 4.150 20 H 0.052 0.948 21 H 0.114 0.886 22 H 0.033 0.967 23 H 0.073 0.927 24 H 0.169 0.831 25 H 0.176 0.824 26 H 0.173 0.827 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.343 1.949 -9.743 10.027 hybrid contribution 0.151 -0.811 1.581 1.783 sum 1.494 1.138 -8.163 8.376 Atomic orbital electron populations 1.21685 0.95725 1.00141 1.01167 1.19163 0.94553 0.97305 0.90170 0.92906 1.20997 1.31767 1.12678 0.89374 0.91642 1.24924 0.94888 0.94958 0.99083 1.69842 1.36552 1.22799 1.23851 0.86521 0.79264 0.79832 0.81654 1.20154 1.21190 1.20088 1.23462 0.72503 0.88450 0.88142 1.90256 1.39497 1.17602 1.85128 1.21681 0.98080 0.95292 0.96835 1.22710 0.97372 0.94181 0.99977 1.22748 0.95920 1.00373 0.88306 1.67475 1.10682 1.10343 1.30384 1.22655 0.97467 0.89734 0.97634 1.22491 0.97444 1.01989 0.93055 0.94795 0.88550 0.96723 0.92702 0.83123 0.82447 0.82726 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.95 37.16 0.33 -2.65 15 2 C 0.01 0.17 2.12 -92.92 -0.20 -0.03 15 3 H 0.05 1.27 6.54 -51.93 -0.34 0.93 15 4 C -0.51 -14.04 8.32 -34.44 -0.29 -14.33 15 5 H 0.07 1.87 7.14 -52.49 -0.37 1.50 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -24.38 11.32 55.43 0.63 -23.75 15 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 15 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 12 C 0.40 8.84 6.18 -30.51 -0.19 8.65 15 13 O -0.45 -11.03 16.02 5.94 0.10 -10.94 15 14 C -0.11 -2.00 5.90 -104.74 -0.62 -2.62 15 15 C -0.12 -1.95 9.45 -38.94 -0.37 -2.32 15 16 C 0.08 1.17 11.17 -17.60 -0.20 0.97 15 17 N -0.48 -7.12 10.33 -13.32 -0.14 -7.26 15 18 C 0.08 1.14 11.17 -17.60 -0.20 0.94 15 19 C -0.13 -2.06 9.69 -38.94 -0.38 -2.44 15 20 H 0.03 0.79 8.14 -51.93 -0.42 0.36 15 21 H 0.10 2.41 6.07 -51.93 -0.32 2.09 15 22 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 15 23 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 24 H 0.15 2.32 6.50 -52.49 -0.34 1.98 15 25 H 0.16 1.69 8.06 -52.49 -0.42 1.27 15 26 H 0.16 1.62 8.06 -52.49 -0.42 1.20 15 27 H 0.14 2.10 7.74 -52.49 -0.41 1.69 15 LS Contribution 241.49 15.07 3.64 3.64 Total: -1.00 -29.70 241.49 -5.59 -35.29 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -2.60 Total: -0.98 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.19 Total: -12.21 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.49 Total: -31.02 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.10 Total: -10.94 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.70 -5.59 -35.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426625.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.437 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds