Wall clock time and date at job start Mon Mar 30 2020 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46705 * 2 1 4 4 C 1.50695 * 109.47401 * 120.00278 * 2 1 3 5 5 H 1.08002 * 120.00085 * 119.99650 * 4 2 1 6 6 C 1.37879 * 120.00194 * 300.00267 * 4 2 1 7 7 N 1.31512 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00208 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47570 * 59.99399 * 8 6 4 10 10 H 1.48498 * 109.47363 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46878 * 299.99758 * 8 6 4 12 12 C 1.50701 * 109.46851 * 240.00467 * 2 1 3 13 13 O 1.20831 * 119.99814 * 270.00047 * 12 2 1 14 14 C 1.47546 * 120.00192 * 89.99789 * 12 2 1 15 15 C 1.40057 * 120.94623 * 0.29340 * 14 12 2 16 16 C 1.38124 * 118.96866 * 180.21846 * 15 14 12 17 17 N 1.31810 * 120.91947 * 359.48099 * 16 15 14 18 18 C 1.31807 * 122.11672 * 0.27347 * 17 16 15 19 19 C 1.38126 * 120.92250 * 359.97438 * 18 17 16 20 20 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46746 * 299.99679 * 1 2 3 22 22 H 1.08991 * 109.47229 * 59.99530 * 1 2 3 23 23 H 0.96999 * 119.99823 * 179.97438 * 7 6 4 24 24 H 1.08001 * 120.51860 * 359.97438 * 15 14 12 25 25 H 1.08002 * 119.54321 * 179.76221 * 16 15 14 26 26 H 1.08000 * 119.54371 * 179.97438 * 18 17 16 27 27 H 1.08001 * 120.52028 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.8077 -1.1192 4.0076 10 1 1.8281 -0.4195 5.2204 11 1 1.8282 -2.5200 4.0079 12 6 2.0323 -0.7103 -1.2305 13 8 2.2337 -1.9014 -1.2007 14 6 2.2782 0.0485 -2.4718 15 6 2.0573 1.4305 -2.5268 16 6 2.2964 2.0996 -3.7112 17 7 2.7357 1.4573 -4.7751 18 6 2.9616 0.1588 -4.7661 19 6 2.7451 -0.5914 -3.6268 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 0.7090 1.1611 3.4844 24 1 1.7016 1.9641 -1.6577 25 1 2.1255 3.1646 -3.7651 26 1 3.3211 -0.3254 -5.6621 27 1 2.9320 -1.6552 -3.6268 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426625.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:39 Heat of formation + Delta-G solvation = -26.921972 kcal Electronic energy + Delta-G solvation = -12682.122402 eV Core-core repulsion = 10404.169304 eV Total energy + Delta-G solvation = -2277.953098 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.42834 -39.82979 -35.91485 -33.83175 -32.54939 -31.93665 -27.31085 -26.51747 -24.50763 -23.56054 -20.77428 -18.61974 -18.02881 -17.31186 -16.69642 -16.46112 -15.82213 -15.50176 -15.21213 -14.72858 -14.55586 -14.28778 -13.53359 -13.08432 -12.77822 -12.69189 -12.57055 -12.26651 -12.11118 -11.10572 -10.88434 -10.86569 -10.57438 -10.15448 -10.14310 -8.18396 -6.31048 -0.40664 0.14869 1.40366 1.41232 1.49128 1.59470 2.39403 2.88367 3.08582 3.15058 3.53977 3.83949 4.06042 4.10057 4.43992 4.57164 4.71893 4.85520 4.89591 4.97996 4.99191 5.19193 5.45546 5.64805 5.67430 5.90103 6.16481 6.67380 6.76673 6.90698 7.36615 8.86605 Molecular weight = 205.08amu Principal moments of inertia in cm(-1) A = 0.055683 B = 0.008499 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.728821 B = 3293.875604 C = 3518.616913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.000 4.000 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.044 0.956 6 C 0.024 3.976 7 N -0.906 5.906 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.278 1.278 12 C 0.401 3.599 13 O -0.486 6.486 14 C -0.135 4.135 15 C -0.126 4.126 16 C 0.093 3.907 17 N -0.484 5.484 18 C 0.093 3.907 19 C -0.133 4.133 20 H 0.020 0.980 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.267 0.733 24 H 0.152 0.848 25 H 0.194 0.806 26 H 0.194 0.806 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 2.897 -10.357 10.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.019 4.019 3 H 0.070 0.930 4 C -0.576 4.576 5 H 0.062 0.938 6 C -0.176 4.176 7 N -0.545 5.545 8 Si 0.779 3.221 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.280 3.720 13 O -0.362 6.362 14 C -0.144 4.144 15 C -0.146 4.146 16 C -0.063 4.063 17 N -0.194 5.194 18 C -0.063 4.063 19 C -0.153 4.153 20 H 0.039 0.961 21 H 0.095 0.905 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.169 0.831 25 H 0.211 0.789 26 H 0.210 0.790 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.639 2.851 -10.949 11.432 hybrid contribution 0.062 -1.040 1.892 2.160 sum 1.701 1.811 -9.057 9.392 Atomic orbital electron populations 1.21516 0.95070 0.99365 1.01691 1.19155 0.95196 0.97063 0.90468 0.92997 1.21201 1.32372 1.12648 0.91394 0.93769 1.25569 0.94996 0.95637 1.01373 1.69918 1.36680 1.23310 1.24567 0.85675 0.78830 0.78683 0.78880 1.19837 1.19897 1.20325 1.23417 0.71377 0.88054 0.89177 1.90229 1.41233 1.18869 1.85876 1.21343 1.01065 0.96165 0.95819 1.22776 0.97559 0.93205 1.01012 1.23262 0.94160 1.01848 0.87048 1.67620 1.10567 1.10712 1.30488 1.23197 0.95777 0.89356 0.97991 1.22617 0.97324 1.02435 0.92964 0.96104 0.90480 0.93592 0.92392 0.83071 0.78890 0.78957 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.95 71.98 0.64 -4.87 15 2 C 0.00 0.00 2.12 -12.29 -0.03 -0.03 15 3 H 0.05 2.54 6.54 -2.39 -0.02 2.52 15 4 C -0.54 -30.34 8.32 25.60 0.21 -30.12 15 5 H 0.04 2.62 7.14 -2.91 -0.02 2.60 15 6 C 0.02 1.33 5.30 84.66 0.45 1.78 15 7 N -0.91 -49.68 11.32 21.45 0.24 -49.43 15 8 Si 0.95 43.70 29.54 68.60 2.03 45.73 15 9 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 12 C 0.40 18.08 6.18 28.14 0.17 18.25 15 13 O -0.49 -24.43 16.02 -1.66 -0.03 -24.46 15 14 C -0.13 -4.82 5.90 -19.94 -0.12 -4.94 15 15 C -0.13 -3.79 9.45 22.68 0.21 -3.57 15 16 C 0.09 2.32 11.17 84.67 0.95 3.26 15 17 N -0.48 -12.68 10.33 -196.05 -2.03 -14.70 15 18 C 0.09 2.29 11.17 84.67 0.95 3.24 15 19 C -0.13 -4.02 9.69 22.69 0.22 -3.81 15 20 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.08 3.88 6.07 -2.39 -0.01 3.87 15 22 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 23 H 0.27 13.86 8.31 -92.71 -0.77 13.09 15 24 H 0.15 4.48 6.50 -2.91 -0.02 4.46 15 25 H 0.19 3.33 8.06 -2.91 -0.02 3.31 15 26 H 0.19 3.19 8.06 -2.91 -0.02 3.17 15 27 H 0.14 4.16 7.74 -2.91 -0.02 4.14 15 Total: -1.00 -63.73 241.49 5.05 -58.68 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.17 Total: 5.00 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 3.66 Total: -20.81 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -1.78 Total: -64.13 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.03 Total: -24.46 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -63.73 5.05 -58.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426625.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.755 kcal (2) G-P(sol) polarization free energy of solvation -63.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds