Wall clock time and date at job start Mon Mar 30 2020 02:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00190 * 2 1 4 4 H 1.48494 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46982 * 300.00523 * 3 2 1 6 6 H 1.48502 * 109.46818 * 60.00258 * 3 2 1 7 7 C 1.37879 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00362 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47289 * 179.97438 * 9 7 2 11 11 N 1.24003 * 120.00139 * 119.99483 * 10 9 7 12 12 N 1.40095 * 120.00005 * 179.97438 * 11 10 9 13 13 C 1.39795 * 119.99756 * 180.02562 * 12 11 10 14 14 C 1.38909 * 120.07615 * 359.72418 * 13 12 11 15 15 C 1.38104 * 119.92462 * 179.76974 * 14 13 12 16 16 C 1.38293 * 120.07636 * 0.51058 * 15 14 13 17 17 C 1.38288 * 120.14636 * 359.73980 * 16 15 14 18 18 C 1.38110 * 120.07369 * 0.02562 * 17 16 15 19 19 H 0.96994 * 120.00045 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47499 * 59.99080 * 9 7 2 21 21 H 1.09004 * 109.47000 * 299.99629 * 9 7 2 22 22 H 0.96999 * 120.00118 * 0.02562 * 12 11 10 23 23 H 1.08001 * 120.04009 * 0.02562 * 14 13 12 24 24 H 1.08005 * 119.96454 * 180.25637 * 15 14 13 25 25 H 1.07991 * 119.93068 * 179.72277 * 16 15 14 26 26 H 1.07998 * 119.96717 * 179.97438 * 17 16 15 27 27 H 1.08003 * 120.03111 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 7 2.1979 -4.4337 0.9266 12 7 3.1079 -5.4988 0.9254 13 6 3.1017 -6.4246 1.9728 14 6 2.1977 -6.2867 3.0185 15 6 2.1912 -7.2058 4.0492 16 6 3.0902 -8.2566 4.0466 17 6 3.9949 -8.3940 3.0097 18 6 4.0036 -7.4811 1.9734 19 1 -0.4850 0.8400 0.0004 20 1 0.6246 -2.5563 -0.8918 21 1 0.6241 -2.5575 0.8881 22 1 3.7422 -5.5939 0.1978 23 1 1.4981 -5.4640 3.0233 24 1 1.4858 -7.1015 4.8605 25 1 3.0859 -8.9714 4.8560 26 1 4.6959 -9.2155 3.0108 27 1 4.7108 -7.5888 1.1642 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034403477.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:07 Heat of formation + Delta-G solvation = 60.800209 kcal Electronic energy + Delta-G solvation = -11934.027650 eV Core-core repulsion = 9692.171223 eV Total energy + Delta-G solvation = -2241.856428 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.28650 -38.86659 -35.78321 -34.67383 -31.77055 -31.14221 -29.15170 -26.01647 -23.86540 -22.99409 -21.61578 -18.79277 -18.56283 -17.94527 -16.78088 -16.58809 -15.65432 -15.34524 -15.24707 -14.62965 -14.42223 -14.18275 -13.86517 -13.37361 -12.89910 -12.71438 -12.35438 -12.28560 -11.88215 -11.74668 -10.97218 -10.72235 -9.98302 -9.80877 -8.60594 -8.31592 -6.48797 0.37540 0.55246 1.18829 1.39418 1.40470 1.43889 1.56129 2.36019 2.98997 3.02782 3.69970 4.11512 4.16189 4.42731 4.64819 4.71074 4.78439 4.89874 5.05978 5.19952 5.41823 5.56810 5.60094 5.74054 5.86246 5.94058 6.19957 6.38071 6.60704 7.20403 7.47374 8.76919 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.065766 B = 0.005502 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.648104 B = 5088.212046 C = 5162.246338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.211 3.789 10 N -0.319 5.319 11 N 0.010 4.990 12 N -0.580 5.580 13 C 0.193 3.807 14 C -0.189 4.189 15 C -0.088 4.088 16 C -0.164 4.164 17 C -0.078 4.078 18 C -0.182 4.182 19 H 0.273 0.727 20 H 0.048 0.952 21 H -0.002 1.002 22 H 0.391 0.609 23 H 0.108 0.892 24 H 0.140 0.860 25 H 0.150 0.850 26 H 0.157 0.843 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.969 -14.411 6.409 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.078 0.922 9 C 0.083 3.917 10 N -0.227 5.227 11 N 0.016 4.984 12 N -0.310 5.310 13 C 0.094 3.906 14 C -0.211 4.211 15 C -0.106 4.106 16 C -0.184 4.184 17 C -0.096 4.096 18 C -0.205 4.205 19 H 0.082 0.918 20 H 0.065 0.935 21 H 0.016 0.984 22 H 0.230 0.770 23 H 0.126 0.874 24 H 0.158 0.842 25 H 0.167 0.833 26 H 0.175 0.825 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.668 -14.201 6.440 16.959 hybrid contribution 0.125 1.160 -0.641 1.332 sum 6.793 -13.041 5.799 15.806 Atomic orbital electron populations 1.70053 1.07609 1.28778 1.49760 1.25911 0.95945 1.03162 0.93694 0.85154 0.78497 0.77532 0.78337 1.19169 1.19407 1.19820 1.21198 0.93584 0.89976 1.53223 0.92198 1.19750 0.89572 0.85513 0.96840 1.73230 1.24019 1.02999 1.22479 1.76910 1.07220 0.96044 1.18210 1.46463 1.35650 1.24036 1.24887 1.17944 0.96407 0.88847 0.87405 1.20892 1.01705 1.02465 0.96039 1.21247 0.98700 0.93590 0.97098 1.21381 0.97086 0.99450 1.00488 1.21264 0.98153 0.97949 0.92261 1.20897 1.01178 0.95668 1.02797 0.91824 0.93469 0.98443 0.76959 0.87427 0.84221 0.83270 0.82507 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.22 13.29 21.45 0.28 -53.93 15 2 C 0.01 0.74 5.46 84.65 0.46 1.20 15 3 Si 0.98 43.70 29.54 68.60 2.03 45.73 15 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 7 C -0.54 -31.37 9.39 25.60 0.24 -31.13 15 8 H 0.06 3.47 7.81 -2.91 -0.02 3.44 15 9 C 0.21 11.72 6.37 85.63 0.55 12.27 15 10 N -0.32 -15.76 11.46 -190.80 -2.19 -17.95 15 11 N 0.01 0.46 11.06 37.02 0.41 0.86 15 12 N -0.58 -20.75 6.64 -51.29 -0.34 -21.09 15 13 C 0.19 5.98 6.72 38.19 0.26 6.23 15 14 C -0.19 -5.89 9.51 22.40 0.21 -5.68 15 15 C -0.09 -2.09 10.04 22.25 0.22 -1.86 15 16 C -0.16 -3.12 10.04 22.29 0.22 -2.90 15 17 C -0.08 -1.44 10.04 22.25 0.22 -1.22 15 18 C -0.18 -4.24 9.90 22.40 0.22 -4.02 15 19 H 0.27 14.80 8.31 -92.71 -0.77 14.03 15 20 H 0.05 2.72 8.14 -2.39 -0.02 2.70 15 21 H 0.00 -0.14 8.06 -2.38 -0.02 -0.16 15 22 H 0.39 12.40 8.83 -213.33 -1.88 10.51 15 23 H 0.11 3.83 7.36 -2.91 -0.02 3.81 15 24 H 0.14 2.67 8.06 -2.91 -0.02 2.65 15 25 H 0.15 1.88 8.06 -2.92 -0.02 1.85 15 26 H 0.16 1.79 8.06 -2.91 -0.02 1.76 15 27 H 0.14 2.63 8.06 -2.91 -0.02 2.60 15 Total: -1.00 -65.03 251.52 2.09 -62.94 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -0.71 Total: 10.53 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 2.61 Total: -27.10 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -1.83 Total: -92.10 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.03 2.09 -62.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034403477.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.741 kcal (2) G-P(sol) polarization free energy of solvation -65.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds