Wall clock time and date at job start Mon Mar 30 2020 02:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38266 * 120.00012 * 2 1 4 4 C 1.38208 * 120.00021 * 179.74167 * 3 2 1 5 5 C 1.38259 * 120.00168 * 0.55090 * 4 3 2 6 6 C 1.38219 * 119.99724 * 359.70041 * 5 4 3 7 7 C 1.38210 * 120.00276 * 180.27122 * 2 1 3 8 8 C 1.50695 * 119.99779 * 0.02562 * 7 2 1 9 9 H 1.09003 * 109.47365 * 33.22763 * 8 7 2 10 10 C 1.53001 * 109.47238 * 273.22314 * 8 7 2 11 11 N 1.46506 * 109.47263 * 153.22812 * 8 7 2 12 12 C 1.36938 * 120.00121 * 209.35063 * 11 8 7 13 13 H 1.08003 * 119.99901 * 359.97438 * 12 11 8 14 14 C 1.38808 * 120.00067 * 179.97438 * 12 11 8 15 15 N 1.31624 * 120.00148 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00017 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47188 * 59.99979 * 16 14 12 18 18 H 1.48505 * 109.47079 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47133 * 299.99744 * 16 14 12 20 20 H 1.08997 * 109.47343 * 269.73047 * 1 2 3 21 21 H 1.09004 * 109.46722 * 149.72855 * 1 2 3 22 22 H 1.08999 * 109.46962 * 29.72870 * 1 2 3 23 23 H 1.08000 * 119.99833 * 359.97438 * 3 2 1 24 24 H 1.08000 * 120.00313 * 180.27562 * 4 3 2 25 25 H 1.08000 * 120.00114 * 179.72201 * 5 4 3 26 26 H 1.08002 * 119.99792 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.46802 * 179.97438 * 10 8 7 28 28 H 1.08991 * 109.47548 * 300.00249 * 10 8 7 29 29 H 1.09003 * 109.46662 * 60.00633 * 10 8 7 30 30 H 0.96998 * 119.99708 * 29.33967 * 11 8 7 31 31 H 0.97000 * 120.00311 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0054 5 6 4.2718 0.0001 -0.0007 6 6 3.5807 -1.1969 -0.0060 7 6 2.1981 -1.1969 -0.0057 8 6 1.4446 -2.5019 -0.0124 9 1 0.5187 -2.3840 -0.5753 10 6 1.1188 -2.9102 1.4257 11 7 2.2687 -3.5384 -0.6394 12 6 1.6735 -4.5802 -1.2994 13 1 0.5966 -4.6381 -1.3573 14 6 2.4542 -5.5619 -1.8939 15 7 3.7667 -5.4912 -1.8237 16 14 1.6424 -6.9835 -2.7934 17 1 0.8174 -6.4562 -3.9100 18 1 2.6879 -7.8881 -3.3355 19 1 0.7764 -7.7360 -1.8506 20 1 -0.3634 -0.0048 1.0276 21 1 -0.3633 -0.8876 -0.5181 22 1 -0.3633 0.8924 -0.5096 23 1 1.6583 2.1327 -0.0004 24 1 4.1204 2.1327 0.0099 25 1 5.3518 0.0002 -0.0010 26 1 4.1207 -2.1322 -0.0112 27 1 0.5734 -3.8540 1.4207 28 1 2.0447 -3.0282 1.9885 29 1 0.5056 -2.1391 1.8921 30 1 3.2359 -3.4865 -0.5872 31 1 4.3123 -6.1770 -2.2395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042237227.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:42 Heat of formation + Delta-G solvation = 27.936441 kcal Electronic energy + Delta-G solvation = -13045.237630 eV Core-core repulsion = 10905.496466 eV Total energy + Delta-G solvation = -2139.741164 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.23994 -35.33429 -32.74684 -31.86841 -29.58855 -28.11725 -26.53754 -23.96488 -22.79292 -20.91033 -19.56185 -17.39100 -15.92079 -15.20427 -14.63966 -14.14540 -13.75311 -13.46030 -13.16649 -12.72791 -12.48663 -12.23828 -11.92803 -11.58887 -11.43717 -11.10933 -10.81275 -10.79289 -10.52483 -10.18775 -9.82698 -9.60728 -8.95460 -8.32642 -8.10090 -6.96704 -5.75760 -3.04275 1.79701 1.86130 3.44937 3.49101 3.50170 4.21424 4.60260 5.19362 5.23778 5.37919 5.51349 5.56931 5.64592 5.69641 5.85217 5.95105 6.05092 6.13117 6.22372 6.38742 6.47813 6.53621 6.63714 6.71119 6.89279 6.96513 7.06314 7.27858 7.48637 7.70452 8.43172 9.53907 10.10844 10.45747 11.47149 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.043276 B = 0.008776 C = 0.007958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.848811 B = 3189.807912 C = 3517.696449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C -0.126 4.126 4 C -0.134 4.134 5 C -0.127 4.127 6 C -0.102 4.102 7 C -0.068 4.068 8 C 0.203 3.797 9 H 0.063 0.937 10 C -0.158 4.158 11 N -0.723 5.723 12 C -0.239 4.239 13 H 0.070 0.930 14 C -0.014 4.014 15 N -0.934 5.934 16 Si 0.908 3.092 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.114 0.886 24 H 0.113 0.887 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.384 0.616 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.281 11.407 4.688 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.152 4.152 5 C -0.145 4.145 6 C -0.120 4.120 7 C -0.069 4.069 8 C 0.094 3.906 9 H 0.080 0.920 10 C -0.218 4.218 11 N -0.366 5.366 12 C -0.370 4.370 13 H 0.088 0.912 14 C -0.209 4.209 15 N -0.582 5.582 16 Si 0.739 3.261 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 H 0.085 0.915 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.132 0.868 24 H 0.131 0.869 25 H 0.134 0.866 26 H 0.146 0.854 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.220 0.780 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.381 11.258 4.587 12.618 hybrid contribution 0.073 -0.789 -0.513 0.944 sum -3.308 10.469 4.074 11.710 Atomic orbital electron populations 1.20839 0.91733 1.02681 1.01947 1.19710 0.95827 0.92622 1.00922 1.20877 0.94206 0.96977 1.02383 1.20971 0.94274 0.97593 1.02360 1.21094 0.99526 0.92625 1.01273 1.21111 0.94175 0.98249 0.98448 1.20359 0.94125 0.95347 0.97083 1.19252 0.93544 0.85045 0.92783 0.91952 1.22386 1.00673 1.00427 0.98337 1.42579 1.05468 1.24619 1.63950 1.19216 0.91531 1.00075 1.26188 0.91164 1.24733 0.95412 0.99273 1.01531 1.69646 1.02907 1.36058 1.49598 0.86258 0.77978 0.82266 0.79628 1.21297 1.21695 1.21267 0.91520 0.90831 0.92225 0.86842 0.86900 0.86625 0.85390 0.92492 0.93430 0.94269 0.77956 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.61 36.01 0.35 -1.22 16 2 C -0.09 -1.47 5.88 -104.62 -0.62 -2.09 16 3 C -0.13 -1.85 9.70 -39.58 -0.38 -2.23 16 4 C -0.13 -1.95 10.05 -39.58 -0.40 -2.34 16 5 C -0.13 -2.05 10.05 -39.58 -0.40 -2.44 16 6 C -0.10 -1.92 9.25 -39.58 -0.37 -2.29 16 7 C -0.07 -1.29 5.05 -104.63 -0.53 -1.82 16 8 C 0.20 4.23 2.65 -69.08 -0.18 4.04 16 9 H 0.06 1.30 5.99 -51.93 -0.31 0.99 16 10 C -0.16 -2.97 9.50 37.16 0.35 -2.62 16 11 N -0.72 -18.50 5.00 -54.55 -0.27 -18.77 16 12 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 13 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 14 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 15 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 16 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.07 1.06 6.00 -51.93 -0.31 0.75 16 22 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 23 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 24 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 25 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 26 H 0.13 2.61 6.14 -52.49 -0.32 2.29 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.38 10.30 5.53 -40.82 -0.23 10.08 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 260.69 15.07 3.93 3.93 Total: -1.00 -30.37 260.69 -7.16 -37.53 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.09 Total: 7.76 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -2.42 Total: -20.33 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.45 Total: -46.39 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.37 -7.16 -37.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042237227.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.467 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds