Wall clock time and date at job start Mon Mar 30 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38266 * 120.00012 * 2 1 4 4 C 1.38208 * 120.00021 * 179.74167 * 3 2 1 5 5 C 1.38259 * 120.00168 * 0.55090 * 4 3 2 6 6 C 1.38219 * 119.99724 * 359.70041 * 5 4 3 7 7 C 1.38210 * 120.00276 * 180.27122 * 2 1 3 8 8 C 1.50695 * 119.99779 * 0.02562 * 7 2 1 9 9 H 1.09003 * 109.47365 * 33.22763 * 8 7 2 10 10 C 1.53001 * 109.47238 * 273.22314 * 8 7 2 11 11 N 1.46506 * 109.47263 * 153.22812 * 8 7 2 12 12 C 1.36938 * 120.00121 * 209.35063 * 11 8 7 13 13 H 1.08003 * 119.99901 * 359.97438 * 12 11 8 14 14 C 1.38808 * 120.00067 * 179.97438 * 12 11 8 15 15 N 1.31624 * 120.00148 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00017 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47188 * 59.99979 * 16 14 12 18 18 H 1.48505 * 109.47079 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47133 * 299.99744 * 16 14 12 20 20 H 1.08997 * 109.47343 * 269.73047 * 1 2 3 21 21 H 1.09004 * 109.46722 * 149.72855 * 1 2 3 22 22 H 1.08999 * 109.46962 * 29.72870 * 1 2 3 23 23 H 1.08000 * 119.99833 * 359.97438 * 3 2 1 24 24 H 1.08000 * 120.00313 * 180.27562 * 4 3 2 25 25 H 1.08000 * 120.00114 * 179.72201 * 5 4 3 26 26 H 1.08002 * 119.99792 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.46802 * 179.97438 * 10 8 7 28 28 H 1.08991 * 109.47548 * 300.00249 * 10 8 7 29 29 H 1.09003 * 109.46662 * 60.00633 * 10 8 7 30 30 H 0.96998 * 119.99708 * 29.33967 * 11 8 7 31 31 H 0.97000 * 120.00311 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0054 5 6 4.2718 0.0001 -0.0007 6 6 3.5807 -1.1969 -0.0060 7 6 2.1981 -1.1969 -0.0057 8 6 1.4446 -2.5019 -0.0124 9 1 0.5187 -2.3840 -0.5753 10 6 1.1188 -2.9102 1.4257 11 7 2.2687 -3.5384 -0.6394 12 6 1.6735 -4.5802 -1.2994 13 1 0.5966 -4.6381 -1.3573 14 6 2.4542 -5.5619 -1.8939 15 7 3.7667 -5.4912 -1.8237 16 14 1.6424 -6.9835 -2.7934 17 1 0.8174 -6.4562 -3.9100 18 1 2.6879 -7.8881 -3.3355 19 1 0.7764 -7.7360 -1.8506 20 1 -0.3634 -0.0048 1.0276 21 1 -0.3633 -0.8876 -0.5181 22 1 -0.3633 0.8924 -0.5096 23 1 1.6583 2.1327 -0.0004 24 1 4.1204 2.1327 0.0099 25 1 5.3518 0.0002 -0.0010 26 1 4.1207 -2.1322 -0.0112 27 1 0.5734 -3.8540 1.4207 28 1 2.0447 -3.0282 1.9885 29 1 0.5056 -2.1391 1.8921 30 1 3.2359 -3.4865 -0.5872 31 1 4.3123 -6.1770 -2.2395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042237227.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:41 Heat of formation + Delta-G solvation = 10.208167 kcal Electronic energy + Delta-G solvation = -13046.006386 eV Core-core repulsion = 10905.496466 eV Total energy + Delta-G solvation = -2140.509920 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.55477 -37.04431 -34.37988 -33.40710 -31.20534 -29.78802 -27.70262 -25.93826 -24.27665 -22.24780 -21.04116 -19.35462 -17.36926 -16.82592 -16.16686 -15.72779 -15.27996 -14.89328 -14.83509 -14.04595 -13.87918 -13.85734 -13.19518 -13.05105 -12.83269 -12.72129 -12.63293 -12.46645 -12.17584 -11.97832 -11.51043 -11.29219 -11.01402 -9.60157 -9.39472 -9.03112 -7.94583 -5.23447 0.54753 0.58222 1.46008 1.49609 1.55506 2.55712 2.94821 3.39375 3.89660 3.98081 4.09310 4.16648 4.27438 4.42812 4.56503 4.73330 4.73777 4.88963 4.92635 4.99609 5.05631 5.18146 5.22400 5.38464 5.47702 5.49720 5.66507 5.73280 5.91036 6.24192 6.28040 7.33115 8.08737 8.32880 9.29195 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.043276 B = 0.008776 C = 0.007958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.848811 B = 3189.807912 C = 3517.696449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.122 4.122 4 C -0.126 4.126 5 C -0.135 4.135 6 C -0.130 4.130 7 C -0.094 4.094 8 C 0.200 3.800 9 H 0.062 0.938 10 C -0.147 4.147 11 N -0.738 5.738 12 C -0.241 4.241 13 H 0.077 0.923 14 C -0.078 4.078 15 N -0.972 5.972 16 Si 0.975 3.025 17 H -0.278 1.278 18 H -0.296 1.296 19 H -0.277 1.277 20 H 0.083 0.917 21 H 0.058 0.942 22 H 0.084 0.916 23 H 0.151 0.849 24 H 0.150 0.850 25 H 0.132 0.868 26 H 0.097 0.903 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.374 0.626 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.661 13.528 4.899 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.153 4.153 6 C -0.148 4.148 7 C -0.095 4.095 8 C 0.092 3.908 9 H 0.080 0.920 10 C -0.207 4.207 11 N -0.380 5.380 12 C -0.373 4.373 13 H 0.095 0.905 14 C -0.270 4.270 15 N -0.622 5.622 16 Si 0.804 3.196 17 H -0.204 1.204 18 H -0.222 1.222 19 H -0.203 1.203 20 H 0.102 0.898 21 H 0.077 0.923 22 H 0.103 0.897 23 H 0.169 0.831 24 H 0.168 0.832 25 H 0.150 0.850 26 H 0.115 0.885 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.208 0.792 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.804 13.409 4.821 15.038 hybrid contribution 0.491 -1.305 -0.529 1.492 sum -4.313 12.104 4.292 13.547 Atomic orbital electron populations 1.20887 0.89789 1.03234 1.03166 1.20036 0.97362 0.92132 1.00053 1.21328 0.94478 0.97701 1.00512 1.21413 0.94656 0.98167 1.00117 1.21323 1.00555 0.92346 1.01031 1.21030 0.94594 0.98284 1.00913 1.20237 0.94109 0.95404 0.99784 1.19417 0.93059 0.85142 0.93191 0.92049 1.22222 1.00468 1.00811 0.97169 1.42813 1.05480 1.25418 1.64306 1.19641 0.91981 1.00463 1.25234 0.90469 1.25581 0.96004 1.02192 1.03227 1.69822 1.04316 1.36926 1.51185 0.85189 0.76916 0.78986 0.78541 1.20417 1.22213 1.20261 0.89833 0.92266 0.89703 0.83148 0.83248 0.85014 0.88514 0.93727 0.94524 0.90983 0.79220 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 9.61 71.24 0.68 -2.06 16 2 C -0.10 -2.88 5.88 -19.86 -0.12 -3.00 16 3 C -0.12 -3.11 9.70 22.27 0.22 -2.89 16 4 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 5 C -0.13 -4.20 10.05 22.27 0.22 -3.97 16 6 C -0.13 -5.03 9.25 22.27 0.21 -4.82 16 7 C -0.09 -3.57 5.05 -19.87 -0.10 -3.67 16 8 C 0.20 8.41 2.65 44.24 0.12 8.53 16 9 H 0.06 2.56 5.99 -2.39 -0.01 2.55 16 10 C -0.15 -5.51 9.50 71.98 0.68 -4.83 16 11 N -0.74 -39.09 5.00 -326.49 -1.63 -40.72 16 12 C -0.24 -13.79 9.93 84.03 0.83 -12.96 16 13 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 14 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 15 N -0.97 -60.98 13.06 21.65 0.28 -60.69 16 16 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.06 1.59 6.00 -2.38 -0.01 1.58 16 22 H 0.08 1.60 8.08 -2.39 -0.02 1.59 16 23 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 24 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 25 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 26 H 0.10 4.27 6.14 -2.91 -0.02 4.25 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.37 21.16 5.53 -92.71 -0.51 20.64 16 31 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -66.66 260.69 4.72 -61.94 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.60 Total: 27.24 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 3.44 Total: -36.80 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -1.35 Total: -101.42 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -66.66 4.72 -61.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042237227.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.150 kcal (2) G-P(sol) polarization free energy of solvation -66.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds